Gene SNSL254_A0016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0016 
Symbol 
ID6486118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp15020 
End bp15967 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content41% 
IMG OID642735461 
Productputative transcriptional regulator 
Protein accessionYP_002039243 
Protein GI194445243 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.556165 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.623653 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATCGA AAGGTGCCAA CAAGAGCTTT GATTATAATT TAATCAAAAT TCTTGACGCT 
GTTATTTTGT CAGGAAATGC GGCTATGGCG GCAAAAAAGT TAGGCATTAC ACCGGCTGCC 
GTTTCTCTGG CGTTAAAGCG CCTGCAGAGT TATTACCCGG AGGAACTGTT TAGCAGAGGG 
AAAGGCGGGC TCATCCCCAC AGCTAAGGCT GTCGACATTC ACCAAAATTT CAGTCAGGTG 
ATGAAACTGG TGGATGATAC ATTTCTCTGT AATAGCAAAA AAGACGAAGC GTTCCAGATA 
ACGTTATTAG GCAGTGATAT TGTTGAAAGC TATTATCTTT CTCAGCTCTA TAACAGCGAT 
ATATTTGACC GTATTTTGAT AAATCATTTC TCCGTCAGAA ATATGAGTCG GGAGCATATC 
AGCGAACTTC TGTTTACTGC GCAAGGCGAT CTGTTGATTA GTGCCGAACC TTTGCTGGAG 
TCCGGCATAG AGAATCAAAT CATTGATAGT TTTAAATCAT TTGTTTGTAT CTGCAGCAGT 
AAACACATGC TGAGTACCCT CTCACAACTG TCGCTACATC ATTTTTATTC TTCGCGTCAT 
GCGTTATATC AGCCGGGGAT GGGGGCTTCA GTGATATATC ATGATAGCGA GTTATTTAAG 
GATGAGCTTT ACTATACTGG CAGGCGTATT GTCGGCTATC GCAGTGATTC GCTTAACGGT 
TTGATGAGCA TGATCGAACG AACCTCATTG ATTGCATTGA TGCCTTTGAA ATTAGCGCTT 
TTTTATAAAA ATCATCGTAA ATATGACATT AAGTTTATTC AGCCTCCGCC CGAACTGGCT 
TTGAAGTCAG TTCAGGTCTA TGCATCCTGG AATAAAAATA GTAGAAATAT ATCGACGATT 
AATGAGATGG TAAGTATGTT ACAAACACTT TCCTCCTTCC GTCGCTAA
 
Protein sequence
MGSKGANKSF DYNLIKILDA VILSGNAAMA AKKLGITPAA VSLALKRLQS YYPEELFSRG 
KGGLIPTAKA VDIHQNFSQV MKLVDDTFLC NSKKDEAFQI TLLGSDIVES YYLSQLYNSD 
IFDRILINHF SVRNMSREHI SELLFTAQGD LLISAEPLLE SGIENQIIDS FKSFVCICSS 
KHMLSTLSQL SLHHFYSSRH ALYQPGMGAS VIYHDSELFK DELYYTGRRI VGYRSDSLNG 
LMSMIERTSL IALMPLKLAL FYKNHRKYDI KFIQPPPELA LKSVQVYASW NKNSRNISTI 
NEMVSMLQTL SSFRR