Gene Smal_3941 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_3941 
Symbol 
ID6474825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp4436164 
End bp4438938 
Gene Length2775 bp 
Protein Length924 aa 
Translation table11 
GC content68% 
IMG OID642733144 
ProductDNA polymerase I 
Protein accessionYP_002030323 
Protein GI194367713 
COG category[L] Replication, recombination and repair 
COG ID[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains 
TIGRFAM ID[TIGR00593] DNA polymerase I 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGAT TAGTCCTGAT CGACGGGTCC AGTTACCTGT ACCGCGCGTT CCACGCGCTG 
CCGCCCCTGT CCAATGCACA GGGCGAACCC ACCGGCGCGC TGTTCGGCGT GGTCAACATG
CTGCGCTCGA CCCTGAAGGA GCGCCCGGCC TACGTGGCGT TCGTGGTCGA TGCGCCCGGC
AAGACCTTCC GCGATGACCT GTACGAGCAG TACAAGGCCA ACCGCCCGCC GATGCCGGAC
GAGCTGCGCA GCCAGGTTGA ACCGATGTGC CGCATCGTCG AAGCGCTGGG CATCAGCATC
CTGCGCATCC CTGGCGTGGA GGCCGATGAT GTGATCGGCA CGCTGGCCCT GCAGGGCGTG
GCGCAGGACC TGAAGGTGAC CATCTCCACC GGCGACAAGG ACTTTGCCCA GCTGGTGCGC
CCGGGCATCG AACTGGTCAA CACCATGACC GGCAGCCGCA TGGATTCCGA TGCGGCGGTG
ATGGAGAAGT TCGGCGTGCG CGCCGACCAG ATCATCGACC TGCTGGCGCT GATGGGCGAC
ACCGTCGACA ACGTGCCGGG CGTGGAGAAA TGTGGGCCGA AGACCGCCGC CAAGTGGCTG
GCCGAGTACC AGCACCTGGA TGGGGTGATG GCGGCCGCGC CGACCATGAA GGGCAAGATC
GGCGAAAACC TGCGCGCCGC GCTGGAGCGC CTGCCGCTGA ACCGCGAGCT GGTGACCATC
CGCACCGACG TGGAGCTGGA GGCCAGCCCG ACCACGCTGG CCCTGCGCGA GCAGGACGTG
CCGGAGCTGA CCGAGCTGTA TGCGCGCTAT GGCTTCACCC AGGCGCTGAA GGAGCTGGGT
GCACCGCTGC CGGCGCCGAC GGCCGCCAGC GAAGCAACGC CGAGCCTGCG TGGCACCGCC
GCTGGCTTCG CCCGGGGCAG CGCCGAGGCA CCGGCAGCGG GCACGCTGGA TCCGGCCCTG
GCCGCGCCGG GTGAATACGA GACCGTGCTG ACCGCCGAGC AGCTGCAGGC CTGGGTCGAG
CGCCTGCAGC AGGCGGACCT GATCAGTTTC GATACCGAAA CCGATGCGCT GGACGCGATG
CGTGCGCGCC TGGTGGGCAT CAGCCTGGCG GTCGAGCCGG GCAAGGCCGC CTATATTCCG
GTCGGCCACG ATTACCCGGG CGCGCCGCCG CAGCTGCCGA TGCAGCAGGT GCTGGACGCA
CTGCGCCCGG TGTTGCAGGA CCCGGCGAAG AAGAAGCTGG GCCAGCACGG CAAGTACGAC
CTGCACGTAC TGCGCCGCCA CGGCGTGGAG GTGCAGGGCT ACCACGACGA CACCATGCTC
GAGAGCTTCG TGCTCAATTC CACCGCCACC CGCCACGACA TGGATTCGCT GGCCCTGCGT
TACCTGGGCT ACAACACCAT CAAGTTCGAG GACGTGGCCG GCAAGGGCGC CAAGCAGATT
CCGTTCTCGC AGGTGGGCAT CGACGAAGCC AGCCGCTACG CGGCCGAGGA CGCCGACATC
ACCCTGCGCC TGCACCGCGC GCTGCAACCG CAGCTGCTGG CCGAGCCGGC GCTGGACAGC
GTGTACCGCG ACATCGAGAT GCCGCTGGTG CCGGTGCTCA CCAGCATCGA AGCCAATGGC
GTGCGGATCG ATACCGTCGA GCTGCGCCGG CAGAGCCAGG ACCTGTCCTC GCGCATGCTG
GCCGCGCAGC AGAAGGCCAC CGAGCTGGCC GGCCGCAGCT TCAACCTGGA TTCGCCCAAG
CAGCTGCAGG CGGTGCTGTT CGATGAGCTG AAGCTGCCGG CGGTGGTGAA GACCCCGAAG
GGCCAGCCCA GCACCAACGA AGAGGCACTG GAGGCGATTG CCGACCAGCA CGAGCTGCCG
CGGGTGATCC TGGAGTACCG CGGCCTGGCC AAGCTGCGCA GCACCTATAC CGACAAGCTG
CCGGAGATGG TCAATCCGGA CACCGGCCGC GTGCATACCA GCTACCACCA GTCCGGCGCC
GCCACCGGCC GCCTGTCCTC GTCGGACCCC AACCTGCAGA ACATCCCGAT CCGCACCGAG
GATGGCCGCC GTATCCGACG CGCATTCATC GCCCCGGAGG GCTTCCAGCT GCTGGCGGCC
GACTATTCGC AGATCGAGCT GCGGATCATG GCCCATCTGT CGGAAGATCC GGGCCTGGTG
GGCGCCTTCG AGCAGGGCGC CGACGTCCAC CGCGCCACCG CCGCCGAGGT GTTCGGGCGC
ACGCTGGAAG AGGTGACTCC GAACGAGCGC CGCGCGGCCA AGGCGATCAA CTTCGGCCTG
ATGTACGGCA TGAGCGCCTT CGGCCTGGCC CGCAACCTGG GCATCGACCG TGGCCAGGCG
CAGGACTACG TGGCGCTGTA CTTCAGCCGC TACCCGGGCG TGCGTGATTT CATGGAGCGG
ATGCGCCAGC AGGCCCGCGA CCAGGGCTAT GTGGAAACCC TGTTCGGCCG CCGCCTGTAC
CTGAACGACA TTCATGCACG TAACCAGGGC CTGCGCGCCG GTGCCGAGCG CGCCGCGATC
AACGCGCCGA TGCAGGGCAC CGCCGCCGAC ATCATCAAGC GTGCGATGGT GGACGTGGAC
CAGTGGCTGC GTGACAGCGG CGCGCCGGCA CGGATGATCC TGCAGGTGCA CGATGAACTG
GTGTTCGAAA CCGAAAGCAG TTTCGTCGAG GAGTTGCGTT TGCAGGTGGT CGAGCGCATG
TCGCAAGCGG CCAAACTGCG GGTGCCGCTG GTGGTCGATA CCGGCATCGG CAACAACTGG
GACGAAGCAC ACTGA
 
Protein sequence
MSRLVLIDGS SYLYRAFHAL PPLSNAQGEP TGALFGVVNM LRSTLKERPA YVAFVVDAPG 
KTFRDDLYEQ YKANRPPMPD ELRSQVEPMC RIVEALGISI LRIPGVEADD VIGTLALQGV
AQDLKVTIST GDKDFAQLVR PGIELVNTMT GSRMDSDAAV MEKFGVRADQ IIDLLALMGD
TVDNVPGVEK CGPKTAAKWL AEYQHLDGVM AAAPTMKGKI GENLRAALER LPLNRELVTI
RTDVELEASP TTLALREQDV PELTELYARY GFTQALKELG APLPAPTAAS EATPSLRGTA
AGFARGSAEA PAAGTLDPAL AAPGEYETVL TAEQLQAWVE RLQQADLISF DTETDALDAM
RARLVGISLA VEPGKAAYIP VGHDYPGAPP QLPMQQVLDA LRPVLQDPAK KKLGQHGKYD
LHVLRRHGVE VQGYHDDTML ESFVLNSTAT RHDMDSLALR YLGYNTIKFE DVAGKGAKQI
PFSQVGIDEA SRYAAEDADI TLRLHRALQP QLLAEPALDS VYRDIEMPLV PVLTSIEANG
VRIDTVELRR QSQDLSSRML AAQQKATELA GRSFNLDSPK QLQAVLFDEL KLPAVVKTPK
GQPSTNEEAL EAIADQHELP RVILEYRGLA KLRSTYTDKL PEMVNPDTGR VHTSYHQSGA
ATGRLSSSDP NLQNIPIRTE DGRRIRRAFI APEGFQLLAA DYSQIELRIM AHLSEDPGLV
GAFEQGADVH RATAAEVFGR TLEEVTPNER RAAKAINFGL MYGMSAFGLA RNLGIDRGQA
QDYVALYFSR YPGVRDFMER MRQQARDQGY VETLFGRRLY LNDIHARNQG LRAGAERAAI
NAPMQGTAAD IIKRAMVDVD QWLRDSGAPA RMILQVHDEL VFETESSFVE ELRLQVVERM
SQAAKLRVPL VVDTGIGNNW DEAH