| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_3572 |
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| Symbol | |
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| ID | 6474452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | - |
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| Start bp | 4024096 |
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| End bp | 4025952 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642732771 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_002029954 |
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| Protein GI | 194367344 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00998328 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.692055 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAACG AACGTCCTGC CCAATCCGAA ATCAAGCAAC TGATCAGCAA GGGCCTGGAA
CAGGGCTACC TGACCTACGC CGAAGTCAAT GACCATCTGC CGGACGACAT GGTCGACCCG
GAACAGATCG AAGACATCAT CGGCATGATC AACGGCATGG GCATTGATGT CCATGAAGTT
GCGCCGGATG TGGAAACCCT GCTTCTCAAT GATGGCAACA CCGGTAACCG CGAAGTCGAT
GACACCGCGG CCGAAGAAGC TGCCGCCGCG CTGAGCGCAC TCGACACCGA AGGTGGCCGT
ACCACCGACC CGGTGCGCAT GTACATGCGC GAAATGGGCA CCGTCGAGCT GCTGACCCGC
GAAGGCGAAA TCGCCATCGC CAAGCGCATC GAGGAAGGCC TTTCGCAGGT GCAGGCCGCA
CTGGGCCAGT TCCCGGTGTC GGTCGAATCG CTGTTGAACG ATTACGAAGC CCACAAGGAA
GGCAAGAAGC GCCTGGCCGA AGTGATCGTC GGCTTCAACG ACCTGGCCGA AGAAGTTGCC
GCGCCGGCCG CGCCCGCTGC CTCCGATGAC GGTGACGACG CAGGCGCCGA CGCTGACGAG
GAAGAGGACG ATGATGTCGA CGGCGGCGAT GAAGAAGCCG CACCGACCGG TCCGGACCCG
GAGGAAGTCG CTGCGCGCAT GCAGGCGCTG AGCGATGCCT TCAATGCCTT CAAGAAGGCT
GTGGCCAAGG GCGACAAGAA GAGCCTGCTG AAGCTCCGCG AGGAGATGTC GGCGGTGTTC
GTCACCCTGA AGCTGCCGCT GCCGCTGACC GACGTGCTGA CCAAGCAGCT GCGCGACACC
ATGGCCGGCA TCAAGTCCCA TGAGCGCCGC GTGCTGAACC TGGCAACCGT CACCGCGCGC
ATGCCGCGCA AGGATTTCAT CCGCTCCTGG GAAGGCAACC AGACCAACCT GGAGTGGGTG
GAAGACGCAC TGAAGCGCAA GCAGAAGTGG TCTTCGGCCC TGCGTGAAGT GAAGGACCAG
ATCATCGCCG AACAGCAGGC GACGATCGAC ATCGAGAAGC TGACCCAGCT GGACCTGGAC
GATCTGAAGG AACTCAGCCG TGCCATGGCC TACGGCGAAG CCAAGGCGCG CAAGGCCAAG
AAGGAAATGG TCGAGGCCAA CCTGCGCCTG GTGATCTCGA TCGCCAAGAA GTACACCAAC
CGCGGCCTGC AGTTCCTCGA CCTGATCCAG GAAGGCAACA TCGGCCTGAT GAAGGCCGTG
GACAAGTTCG AATACCGTCG TGGCTACAAG TTCTCCACGT ATGCGACCTG GTGGATCCGT
CAGGCCATCA CCCGTTCGAT CGCCGATCAG GCGCGCACCA TCCGTATCCC GGTGCACATG
ATCGAAACGA TCAACAAGTT GAACCGCATT TCCCGCCAGA TGCTCCAGCA GTACGGCCGC
GAGGCTACGC CGGAGGAGCT GGCCAAGGAA ATGGACATGC CGGAAGACAA GATCCGCAAG
GTGATGAAGA TCGCCAAGGA GCCGATCTCG ATGGAAACCC CGATCGGCGA CGACGAGGAT
TCCCATCTGG GCGACTTCAT CGAGGACACC AACGTGGAGT CCCCGATCGA GAACACCACC
AACATCAACC TGTCTGAAAC CGTGCGCGAC GTGCTGGCCG GCCTCACCCC GCGTGAAGCC
AAGGTGCTGC GCATGCGCTT CGGCATCGAC ATGAACACCG ACCACACCCT CGAGGAAGTC
GGCAAGCAGT TCGACGTGAC TCGCGAGCGC ATCCGCCAGA TCGAAGCGAA GGCCCTGCGC
AAGCTGCGTC ACCCGAGCCG CTCGGAGCAG CTGCGCAGCT TCCTGGATAT CGACTGA
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| Protein sequence | MANERPAQSE IKQLISKGLE QGYLTYAEVN DHLPDDMVDP EQIEDIIGMI NGMGIDVHEV
APDVETLLLN DGNTGNREVD DTAAEEAAAA LSALDTEGGR TTDPVRMYMR EMGTVELLTR
EGEIAIAKRI EEGLSQVQAA LGQFPVSVES LLNDYEAHKE GKKRLAEVIV GFNDLAEEVA
APAAPAASDD GDDAGADADE EEDDDVDGGD EEAAPTGPDP EEVAARMQAL SDAFNAFKKA
VAKGDKKSLL KLREEMSAVF VTLKLPLPLT DVLTKQLRDT MAGIKSHERR VLNLATVTAR
MPRKDFIRSW EGNQTNLEWV EDALKRKQKW SSALREVKDQ IIAEQQATID IEKLTQLDLD
DLKELSRAMA YGEAKARKAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV
DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI SRQMLQQYGR
EATPEELAKE MDMPEDKIRK VMKIAKEPIS METPIGDDED SHLGDFIEDT NVESPIENTT
NINLSETVRD VLAGLTPREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER IRQIEAKALR
KLRHPSRSEQ LRSFLDID
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