Gene Smal_3549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_3549 
Symbol 
ID6474428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp3990009 
End bp3993386 
Gene Length3378 bp 
Protein Length1125 aa 
Translation table11 
GC content65% 
IMG OID642732747 
Productouter membrane autotransporter barrel domain protein 
Protein accessionYP_002029931 
Protein GI194367321 
COG category[S] Function unknown 
COG ID[COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain 
TIGRFAM ID[TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCACC CGCTGTATGG CCGTTCGTCC CACTCCCGTT CCCCGCGCAG CCGCTTGGCG 
CTGGCAGTTG CCAGTTGCCT GTTGTTGGCT GCTGCCACGC CCGCCACCGC CAGCGCATCA
CTCGACACCT GGCAGCAACA GCGCCAGTTG CAGGCAGCTT GGGCGCAACC GGCCACTTCG
GCGATCCCTT CCTCAACGGC TCAGTTTCCG GTTGCAGCAC CCACAGCGGC AACCAGCACC
ACGGCGACCC TCGGCAATCC GGGCGACCCG GCCAGTTGGC GCACGGACGA ATTCAACGCC
GACTGGGGTT TGGCTGCGAC CAACGCCGAC CATGCCTATG CGCGTGGCCT GACCGGTACC
GGCATCCGCC TGGGCGTTTT CGACAGTGGC ACAGGCCTGG ACCACCCGGA GTTCGCCGGC
AAGAACCATC GCAGCCTGCG TCTGGCCGAT GTGCTTGCCG ATGGCAGCCT GTGCGACCGC
GAGGTACTCG ACGGCCCGGA TGCCTGCTTC ACCAGCGACG GCAACCAGGT TGCTATCGAT
TACACCCTGA TTGATCCGGC CTACAGAGAC CTGCTCAATC GAAACGGCTA CTTCGAGGGT
CCGGGCTACA ACGTGCACGG CACCCATGTA TCCGGAACCA TCGCCGCCAA CCGCGATGGC
AATGGAATGC ACGGCGTCGC GTTCGGCGCT GACCTCACCG TAGCCCGCCT GTTTGCCAAC
AGCGTGAACT ACCTGACCGT CGTCGAGCGG GATGGCGGAC TGTACCTGGA CAGTAAGTCG
GTTGCCGCGC TGGGAGCCTC CGATTCGATC TTCCCGCAGC TGTACGCACA GCTCAACGAA
CAGCACGTAC GCGCAGTCAA CCATAGTTGG GGCCTGACCA ACGAACCGGA CACCGCCGAG
AAACTCGACT TCTATCTGTC GCATCCGGAT CTTGCGGACA GCCTCGGCGC GATAGCAGAA
GGCTCACGTG CCCGCGGCCT GATCCAGGTA TGGGCTGCGG GAAACACCGA CTCGGTCAAT
CCCTCACCAG AGCAGGCACC GATAGCAGGC ATGTATGCAT CGATGCCACG CGCCTTCACT
GACATCGAGC CGTACTGGTT GGCCGTAGTC AACGTCAACC AGGCCCTGGA GCTGAGCAAT
CGCTCGATGC GCTGCGGCCT GGCCGCAAAC TGGTGCCTGG CCGCGCCGGG TTCGAACATC
AATTCGACCG TCTATGGCGA AGACTCGGTC ATTGATGCCA TCCCCCGCGA GGACAATGGC
AATGTGATCC TCGAGGTCTC CGGTCAGGCC CCAACTTATG CCTACGGGAA CCTGAGCGGC
ACCTCCATGG CGGCACCCCA TGTAACCGGC GCGCTGGGCC TGCTGTTCGA GCGCTTCCCC
TATCTGGACA GTGCGCAGGT CCGCGACGTG CTATTGACCA CCGCGCGCGA TCTTGGCGCA
CCAGGCATCG ATGAGATCTA TGGCTGGGGC CTGATGGACC TGCGCAAGGC CATCGAAGGC
TACGGCTCGC TGCGCGTGGA TACCAACGTG GTGATGAACC AGAAGGCCGG TGGCCTGAAG
GTGTGGGAAG GCGACGCCTG GGATGACTGG ACCAACGACA TCGGCGGCGC TGGCAAGCTG
ACCAAGTCCG GCATCGGCTG GCTGCGCCTG AGTGGCGACA ACAGCTTCAA CGGCGCGGTA
CTGCAGGACG GCACGTTGGA ATTGAACGGC ACCAACACAC TCACGTCAGC GGTCGAGGTC
CAGGGTGGCC AGTTCCTGCT CAACGGTTCG CTGGTTTCCA CCGCCTTGAA CACCACTGGA
GGCGTGAGCA CGGTCAGCAG CAGCGGCCTG CTGAAGGACA GCAACCTGAC CGTCGATGGC
GGCGTGGTGT CCTTCAACGG CACGCAGACC GGCGGCACCA CCACGGTCGG TTCGAACGGC
CTGTTGAAGG GCATCGGCAC ACTGGGCAAC ACCCGTGTGG ACGGCATCAT CGCGCCCGGC
AATTCGATCG GCACGCTGAC CATCAACGGC AACTACGTGC AGGGTGCAAC CGGCGTCTAT
GCCGCCGAAC TTGCCCCGGG CGGCCGCAGT GACCAGTTGC ACGTAACCGG CACCGCCACT
CTCGGCGGTA CCCTGGTCGC ACTGCCGGAG CCGGGTACCT ACTACCTCGG CGAGCAGTTC
AATTTCATCC GCGCCGACGG CGGTGTCAGC GGCCAGTTCG CGAAAACCGA TTTCAGCGCG
TTCTCGCCGT TCCTGCAGTT CAGCCTGGCC TACGGTGCCA ATGGCACCCG CATCGACGTG
GCACGCGGCG CCTCTCTGGC CAGTGCTGCT GCCACGCCGA ACCAACGCGC AGTGGCCACC
AGCGCCGATG GACTGGCGAT CAACCAGGGC CTGCCCAAGC CGCTGACCCA ACTGTTCCCG
CAACAGGTAG GTGGCGTGCT CGACGGTCTC AGCGGCGAAC TGCATCCGGC CACGGCACTG
GCCCTGGTCG AGGGCAGCCG CTACGTGCGT GATGCCGCGC TGTCGCGCCG TGCCGGTACC
ACCGCGCCAG GTGCCGACGC GGGCGATGCC ACCGGCGCCT GGGTGCAGGC ACTCGGCGGC
AACAGCAAGC TGGATGGCAA CAGCAACACC GCCCGCACCG AAGCCAACAG CAACGGCCTG
TTGATCGGCA TCGACCGCGA GTTCTCCGGC TGGCAGGTGG GCGTGCTGGC CGGTACCGGC
CGTACCGACG TGAAGCAGCA GGAGCGTCGT GCCAAGTCGA AGATCGACAA CACGCACTTC
GGCGCCTACG CCAGCCACAA CTGGGGCGGC TTCGGCCTGC GCGGCGGTGT GGCCTGGAGC
AAGCACGAGG TGAAGAGCAC GCGCGACGTG GCGTTCGCTG GCTTCAGCGA CAGCCTGAGC
GCACGCTACG ACGCCCGCAC CCGCCAGGCC TTCATCGAAG CCGGTTACCG CTTCGGTGGT
CCGGAAGCCG GGCTGGAACC GTACCTGCAG GTTGCGCGCG TGGAAGTGGA CCTCAAGCGC
ATCAACGAAC GCGGTGGTGC GGCCGCCCTG CAGGGCAAGG TGGATGACAC CGCAACCACG
ATCGCTACCG CTGGCCTGCG CTTCGACAAG GGCCTGAAGG CCTCGTTCCA GCAGGACAGC
TGGCTGCACC TGCGCGGTGG CGTGGGCTAT CGCCGCGCCT CTGGCGACCG CAGCCAGGTG
GCCAACCTGG CCTTCGCCAA CAGCAGCAGC ACCTTCGCGG TCGAGGGCGC ACCAATTGCC
GACAACGCCG TGGTGGCCGA GCTGGGCCTG TCGGCATGGC TGACCCCGCG GCAGCAGCTG
GAGCTGGGTT ACAGCGGCCA GTTCGGCAGT GAAAGCCGCG ACCATGGTGC CAATGCACGC
TGGTCGGTCC GCTTCTAG
 
Protein sequence
MNHPLYGRSS HSRSPRSRLA LAVASCLLLA AATPATASAS LDTWQQQRQL QAAWAQPATS 
AIPSSTAQFP VAAPTAATST TATLGNPGDP ASWRTDEFNA DWGLAATNAD HAYARGLTGT
GIRLGVFDSG TGLDHPEFAG KNHRSLRLAD VLADGSLCDR EVLDGPDACF TSDGNQVAID
YTLIDPAYRD LLNRNGYFEG PGYNVHGTHV SGTIAANRDG NGMHGVAFGA DLTVARLFAN
SVNYLTVVER DGGLYLDSKS VAALGASDSI FPQLYAQLNE QHVRAVNHSW GLTNEPDTAE
KLDFYLSHPD LADSLGAIAE GSRARGLIQV WAAGNTDSVN PSPEQAPIAG MYASMPRAFT
DIEPYWLAVV NVNQALELSN RSMRCGLAAN WCLAAPGSNI NSTVYGEDSV IDAIPREDNG
NVILEVSGQA PTYAYGNLSG TSMAAPHVTG ALGLLFERFP YLDSAQVRDV LLTTARDLGA
PGIDEIYGWG LMDLRKAIEG YGSLRVDTNV VMNQKAGGLK VWEGDAWDDW TNDIGGAGKL
TKSGIGWLRL SGDNSFNGAV LQDGTLELNG TNTLTSAVEV QGGQFLLNGS LVSTALNTTG
GVSTVSSSGL LKDSNLTVDG GVVSFNGTQT GGTTTVGSNG LLKGIGTLGN TRVDGIIAPG
NSIGTLTING NYVQGATGVY AAELAPGGRS DQLHVTGTAT LGGTLVALPE PGTYYLGEQF
NFIRADGGVS GQFAKTDFSA FSPFLQFSLA YGANGTRIDV ARGASLASAA ATPNQRAVAT
SADGLAINQG LPKPLTQLFP QQVGGVLDGL SGELHPATAL ALVEGSRYVR DAALSRRAGT
TAPGADAGDA TGAWVQALGG NSKLDGNSNT ARTEANSNGL LIGIDREFSG WQVGVLAGTG
RTDVKQQERR AKSKIDNTHF GAYASHNWGG FGLRGGVAWS KHEVKSTRDV AFAGFSDSLS
ARYDARTRQA FIEAGYRFGG PEAGLEPYLQ VARVEVDLKR INERGGAAAL QGKVDDTATT
IATAGLRFDK GLKASFQQDS WLHLRGGVGY RRASGDRSQV ANLAFANSSS TFAVEGAPIA
DNAVVAELGL SAWLTPRQQL ELGYSGQFGS ESRDHGANAR WSVRF