Gene Smal_3468 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_3468 
Symbol 
ID6476747 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp3903841 
End bp3905022 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content69% 
IMG OID642732666 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_002029850 
Protein GI194367240 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.143252 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGCTGA GCCGAATCCG ACCCTTTGCA CTGTCGCTGG CGATCGCCGC GACCGTGGCT 
GCCTGTGGCG GCCAACCCCA GGCCCCCGAG CAGGGCCCGG GCGATGTCAC CGTGGTAACG
CTGAAGTCCG AAACCGTGGG CCTGACCCGC GAACTGCCGG GTCGTACCAA TGCGTTCCTG
GTCGCCGAAG TGCGCCCGCA GGTCAATGGC ATCGTCGCCA AGCGCTTGTT CACCGAAGGC
GGAATGGTCA AGGCCGGCGA GCCGCTGTAC CAGATCGAGG ACGCCAGCTA TCGCGCCCAG
GCCAACAGCG CCCGCGCGCA GCTGGCCCGT GCCGAAGCCA CTGCCAATGC CGCCCGCCTG
AGCGCCAAGC GCATCACCGA GCTGGCCAAG GTCGACGCGG TCAGCCAGCA GGATCTGGAA
AACGCCGTGG CTGCGCAGAA GCAGGCCGAA GCAGACGTCG GTGCCGCCAA GGCATCGCTG
GATGCGGCCA ACGTCACCCT CGGCTACGCG CGCATCACCG CGCCGATCAG CGGCCGCATC
GGCAAGTCCA GCGTCACCCA GGGCGCGCTG GTCAGCGCCG GCCAGGCCAC CGCGCTGGCC
ACCGTGCAGC AGCTGGACCC GATCTACGTC GACCTCACCC AGTCCTCGGC CGAGCTGCTG
CAGCTGCGCC GCGAACTGGC CGCCGGCCGC CTGCAGGACA ACCAGCAGAC CCCGGTCAGC
ATCCTGATGG AAGACGGCAG CGAATTCGCC CACAAGGGCA CGCTGGAGTT CTCCGAAGTC
AGCGTCGATC CGGCCACCGG CAGCTTCGGG CTGCGGGTCA AGGTCGACAA TCCCGATGGC
CTGCTGATGC CCGGCATGTA CGTGCGCGCC GTGATCGGCG GCGGCGTGCG CAGTGATGCG
GTGCTGGTGC CGATGCAGGG CATCGCCCGT GATCCGAAGG GCGACACCAG CGCCATGGTG
GTCGGCAAGG ACAACAAGGT CGAAGCGCGC CCGGTCAAGG TCAGCCGCAC GGTTGGCGAC
AAATGGCTGG TCGAGGACGG CCTGAAGGCC GGCGACAAGG TCATCGTCGA AGGCCTGCAG
AAGATCGGCC CGGGCATGCC CGTGAACGTC ACCGAACAGG GTGCCGCTCC GGCCAAGCCG
GCTGCCGCCC AACCTGCAGC TGCGGCCGCA GGCGCGAAGT AA
 
Protein sequence
MLLSRIRPFA LSLAIAATVA ACGGQPQAPE QGPGDVTVVT LKSETVGLTR ELPGRTNAFL 
VAEVRPQVNG IVAKRLFTEG GMVKAGEPLY QIEDASYRAQ ANSARAQLAR AEATANAARL
SAKRITELAK VDAVSQQDLE NAVAAQKQAE ADVGAAKASL DAANVTLGYA RITAPISGRI
GKSSVTQGAL VSAGQATALA TVQQLDPIYV DLTQSSAELL QLRRELAAGR LQDNQQTPVS
ILMEDGSEFA HKGTLEFSEV SVDPATGSFG LRVKVDNPDG LLMPGMYVRA VIGGGVRSDA
VLVPMQGIAR DPKGDTSAMV VGKDNKVEAR PVKVSRTVGD KWLVEDGLKA GDKVIVEGLQ
KIGPGMPVNV TEQGAAPAKP AAAQPAAAAA GAK