| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_2467 |
|---|
| Symbol | |
|---|
| ID | 6476957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 2770229 |
|---|
| End bp | 2772181 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642731655 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002028853 |
|---|
| Protein GI | 194366243 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component
[COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.385523 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGC CACTGCTGCG CGTTCGCGGC GTACGCCGTG AATTTGCCGC GGGCGAGCAG
ACGCTGGTGG TACTCGACGG CATTGACCTG GATATTCACG CAGGTGAACT GGTGGCCATC
GTAGGCCAAT CCGGTTCCGG CAAGTCCACA CTGATGAACA TCCTGGGTTG CCTGGATCGC
CCTTCCGCCG GCGTCTATCA GATCGCCGGG CGCGAGACCT CGCAGATGTC GCCTGATGAA
CTGGCCGAAT TACGCCGCGA GCACTTCGGC TTCATCTTCC AGCGCTATCA CCTGCTGACC
GATCTGACTG CACTGAGCAA TGCGGAGGTG CCTGCGATCT ACGCCGGCAT GCCTGCCGAA
GCACGCCATG CACGGGCAGC CACCTTGCTG TCGCGGCTGG GTCTGGGCGA GCGCATGCAG
CATCTCCCCG GCGAGCTCTC GGGCGGCCAG CAGCAACGCG TTTCGATTGC GCGTGCGCTG
ATGAATGGTG GCGCGGTGAT CTTCGCCGAC GAACCCACGG GTGCGCTGGA TACGCATTCC
GGAAAAGAGG TGATGAAGAT CCTCGGCGAG CTGCACGCCG AGGGCCATAC TGTGGTGCTG
GTCACGCATG ACATGGCCGT GGCCGAGCAT GCGCAGCGCA TCATCGAAAT CCGCGATGGG
CGGATCGTGG ATGATCGTGC AACCGGTACA GCTCTGGCAG CGGGCGTGGT CAGGCCAGCC
GCGCCCCAAT CCACGGGTAG CGGCGGCTGG CAGGTCTGGC GGGACCGGTT CGCTGAAGCC
TTCCGCATGG CACTGCGCGC GATGAACGCC CACCGCATGC GCACCTTCCT GACCATGCTC
GGAATCATCA TCGGCATTGC TTCGGTCGTG GCGGTGGTAG CACTGGGCAC CGGTGCACGG
CAGGCCATCC TGTCCAACAT CTCCTCGTTG GGTACCAACA CGATCGAGAT CTATCCCGGT
TCCGGTTTTG GCGACCTGCA CTCGGCGCGG GTGGAAACAC TCACCCCCGG CGACAGCGTG
GCCCTGGCCC GGCAGCCATT CGTGGACAGC GCCACCCCGG GTGTTGCCAC CAGCGGCACC
GCCCTGCGCG GCAACCGCTC TGCCAGTGTG CAGGTGCAGG GCGTCAGCGA GCAGTACTTC
CGCGTGCATG GCCTGAAGCT CGGCGAGGGC GCCTTCTTCG GTCCACCCGG CGTGGCCGGC
TACCAGCAGA TGGTGGTGAT CGACGCCAAT ACCCGCGAAC GCTTCTTCGC CGCGACCGAC
AATCCGATCG GGCAGACCCT GCTGCTGGGC AATGTCCCGG TGCGCGTGGT GGGCGTGGTG
AAGAAAGACG CCGGTGCAGC CGGTGATGCA TCGTTGCTGC GGGTATGGCT GCCCTACACC
ACCGCAATGG CGCGCGTACT GGGGCAGAGC CACGTCTCCA GCATCACCGT GCGCGTCTCG
GATGCGATCA GCATGGAAGC GGCTGAGCAG GCCATCGCGC GACTGCTGAC TCGCCGCCAC
GGCAGCACCG ATTTCTACAT GAGCAACAAC GCGCAGATCC GTAGATCCAT TGAACAGACC
GCCGGCATCC TGACCATGAT GATCAGCTCC ATCGCTGCCA TCGCACTGGT GGTGGGCGGG
ATCGGGGTGA TGAACATCAT GCTGGTGTCG GTGACCGAGC GAACCCGCGA GATCGGCGTG
CGCATGGCGG TGGGCGCGCG ACGCAGCGAC ATCCTGCAGC AGTTCCTGAT CGAATCGGTG
CTGGTCTGCC TGCTCGGCGG CGTGCTCGGC ATCGGCGTGG CACTGGCGCT GGGCGCGGTC
ATGGAGCTGG CCGATGCGGG CTTCAGCCTG GTGTTCTCCG TCAACTCGAT TCTGGCTGCA
TTCGTGTGTT CCAGCCTGAT CGGCGTTGGT TTCGGCTTCC TGCCGGCACG CCGTGCCGCA
CAGCTGGATC CTGTGGAGGC GCTGGTTCGA TAG
|
|---|
| Protein sequence | MTEPLLRVRG VRREFAAGEQ TLVVLDGIDL DIHAGELVAI VGQSGSGKST LMNILGCLDR
PSAGVYQIAG RETSQMSPDE LAELRREHFG FIFQRYHLLT DLTALSNAEV PAIYAGMPAE
ARHARAATLL SRLGLGERMQ HLPGELSGGQ QQRVSIARAL MNGGAVIFAD EPTGALDTHS
GKEVMKILGE LHAEGHTVVL VTHDMAVAEH AQRIIEIRDG RIVDDRATGT ALAAGVVRPA
APQSTGSGGW QVWRDRFAEA FRMALRAMNA HRMRTFLTML GIIIGIASVV AVVALGTGAR
QAILSNISSL GTNTIEIYPG SGFGDLHSAR VETLTPGDSV ALARQPFVDS ATPGVATSGT
ALRGNRSASV QVQGVSEQYF RVHGLKLGEG AFFGPPGVAG YQQMVVIDAN TRERFFAATD
NPIGQTLLLG NVPVRVVGVV KKDAGAAGDA SLLRVWLPYT TAMARVLGQS HVSSITVRVS
DAISMEAAEQ AIARLLTRRH GSTDFYMSNN AQIRRSIEQT AGILTMMISS IAAIALVVGG
IGVMNIMLVS VTERTREIGV RMAVGARRSD ILQQFLIESV LVCLLGGVLG IGVALALGAV
MELADAGFSL VFSVNSILAA FVCSSLIGVG FGFLPARRAA QLDPVEALVR
|
|---|
| |