Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smal_1398 |
Symbol | |
ID | 6475256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stenotrophomonas maltophilia R551-3 |
Kingdom | Bacteria |
Replicon accession | NC_011071 |
Strand | + |
Start bp | 1587851 |
End bp | 1589599 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642730569 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_002027786 |
Protein GI | 194365176 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTTCCA ATCACGCGCC GGTGTGGCCG ATCTACAAAC GTCTGCTGGG GTACACCCGC GCCTACTGGG TGTTCATGGT GGCTGCGGTC ATCGCCATGG TGGTCGAAGC CCTGGCCGGC TATCACTTCA CCAAGCTGAT GGAGCCGCTG GTCAACCGTG GCTTCGTCAA TCCCGAGCCG CGCATGGCGG TGATCTTGCC GCTGACCATC CTCGGCCTGT TCCTGATGCG CAGCGTCGCC ACCTGGGTAA GCGACTACGC GCTGGCCAAG ACCGGCCGCA GCGTGGTGCG CGACCTGCGC GAACAGGTCC TGGCCAAGTA CCTGCACCTG CCGTCCTCGC ACTTCGATAC CGAAGCGACG CCGGTCATGG TCAGCCGCCT GAATTTTGAT ACCGAACAGG TCACCCAGGC CAGCGCTGAT GCGCTCAAGA CCGTGGTCGC CGACACCCTG ACCATCATCG CCATGCTGGC GGTGATGCTG CAGATGAGCG TCAAGGTCAC CGTGGCCATG CTGGTGGTGG TGCCGTTGAT CGGCGTGATC GTGTCCTACG TGGGCAAGCG CTATCGCCGC ATCAGCCGTG GCATCCAGGA CGGCATGGGC TCGATGGCGC AGACCGCCGA GCAGTCGCTG GCCGCGCAGC AGGAAGTGAA GGTGCATGGC ACCCAGCAGC ACGAGATCTC GCGTTACTCG CGCCTGGCCA ACCGCATGCT GTCGCTGAAC ATGAAGGTGG AAGTCACCCG TGCTGCCGCC TCCAGCGTGG TCCAGTTCCT GGCGGCGCTG GCGCTGGCGG TGATCGTCTG GGTGTCCACC CGCGAAGCGC TGGCTGGCCG CCTCAACGCC GGCCAGTTCA TGGGCCTGAT GACCTCGATG ATGGCCATCA TTCCCTCGCT GCGCCGCCTG ACCAGCGTGC AGACCTCCAT CTCGCGGGGT GTAGCTGCCG CCGAACGCCT GTTCAGCATC CTCGACATGC CGGTCGAGCG CGACGAAGGC CGAAATGCAG TGCAGCGCGT GCGCGGTGAA CTGGCGTTCG ACCACGTCAT GCTGCGCTAC CGCGAGGACA GCGGCATTGC CCTGGACGAC ATCAGTTTCG TCGCCAAGCC GGGTACGGTC ACCGCCATCG TCGGCCGTTC CGGTAGCGGC AAGACCAGCC TGATCCGGCT GGTGCCGCGC TTCTACGAAC CCAGTGGCGG GCGCATCACC CTTGATGGCG TGGCGCTGGA TGACTATCCG TTGGCCGACC TGCGCCGCCA GGTGGCAATG GTCGGGCAGA AGGTCATGCT GTTCGACGAC ACCATCGCCG CCAACATCGC CTATGGCATG GACGCGAGCG TTGAACAGAT CCGTGCAGCG GCTGAAGCTG CCAACGCGTG GGAATTCATC GAGCGCATGC CGCAGCAGCT GCAGACCCCG GTCGGCGAGA ACGGCGCACT GTTGTCCGGC GGCCAGCGCC AGCGCCTGGC GATCGCCCGT GCGATCCTGC GCGATGCGCC GATCCTGATC CTGGACGAAG CCACCGCCGC GCTCGACAAC GAATCCGAGC GCCTGGTGCA GGACGCGCTG CAGCGCCTGA TGCCCGAGCG CACCACGCTG GTCATCGCGC ACCGCCTGTC GACCATCGAG CATGCCGACC AGGTGCTGGT GATGGATCAC GGCCGCATCG TCGAGCGTGG CACTCACAAG GAACTTCTGA CCATGGGCGG GCTGTACCAG CATCTGCACA GCATGCAGTT CCGCGAAAGG CAGGACTGA
|
Protein sequence | MSSNHAPVWP IYKRLLGYTR AYWVFMVAAV IAMVVEALAG YHFTKLMEPL VNRGFVNPEP RMAVILPLTI LGLFLMRSVA TWVSDYALAK TGRSVVRDLR EQVLAKYLHL PSSHFDTEAT PVMVSRLNFD TEQVTQASAD ALKTVVADTL TIIAMLAVML QMSVKVTVAM LVVVPLIGVI VSYVGKRYRR ISRGIQDGMG SMAQTAEQSL AAQQEVKVHG TQQHEISRYS RLANRMLSLN MKVEVTRAAA SSVVQFLAAL ALAVIVWVST REALAGRLNA GQFMGLMTSM MAIIPSLRRL TSVQTSISRG VAAAERLFSI LDMPVERDEG RNAVQRVRGE LAFDHVMLRY REDSGIALDD ISFVAKPGTV TAIVGRSGSG KTSLIRLVPR FYEPSGGRIT LDGVALDDYP LADLRRQVAM VGQKVMLFDD TIAANIAYGM DASVEQIRAA AEAANAWEFI ERMPQQLQTP VGENGALLSG GQRQRLAIAR AILRDAPILI LDEATAALDN ESERLVQDAL QRLMPERTTL VIAHRLSTIE HADQVLVMDH GRIVERGTHK ELLTMGGLYQ HLHSMQFRER QD
|
| |