Gene Smal_1398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1398 
Symbol 
ID6475256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp1587851 
End bp1589599 
Gene Length1749 bp 
Protein Length582 aa 
Translation table11 
GC content65% 
IMG OID642730569 
Productlipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 
Protein accessionYP_002027786 
Protein GI194365176 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTCCA ATCACGCGCC GGTGTGGCCG ATCTACAAAC GTCTGCTGGG GTACACCCGC 
GCCTACTGGG TGTTCATGGT GGCTGCGGTC ATCGCCATGG TGGTCGAAGC CCTGGCCGGC
TATCACTTCA CCAAGCTGAT GGAGCCGCTG GTCAACCGTG GCTTCGTCAA TCCCGAGCCG
CGCATGGCGG TGATCTTGCC GCTGACCATC CTCGGCCTGT TCCTGATGCG CAGCGTCGCC
ACCTGGGTAA GCGACTACGC GCTGGCCAAG ACCGGCCGCA GCGTGGTGCG CGACCTGCGC
GAACAGGTCC TGGCCAAGTA CCTGCACCTG CCGTCCTCGC ACTTCGATAC CGAAGCGACG
CCGGTCATGG TCAGCCGCCT GAATTTTGAT ACCGAACAGG TCACCCAGGC CAGCGCTGAT
GCGCTCAAGA CCGTGGTCGC CGACACCCTG ACCATCATCG CCATGCTGGC GGTGATGCTG
CAGATGAGCG TCAAGGTCAC CGTGGCCATG CTGGTGGTGG TGCCGTTGAT CGGCGTGATC
GTGTCCTACG TGGGCAAGCG CTATCGCCGC ATCAGCCGTG GCATCCAGGA CGGCATGGGC
TCGATGGCGC AGACCGCCGA GCAGTCGCTG GCCGCGCAGC AGGAAGTGAA GGTGCATGGC
ACCCAGCAGC ACGAGATCTC GCGTTACTCG CGCCTGGCCA ACCGCATGCT GTCGCTGAAC
ATGAAGGTGG AAGTCACCCG TGCTGCCGCC TCCAGCGTGG TCCAGTTCCT GGCGGCGCTG
GCGCTGGCGG TGATCGTCTG GGTGTCCACC CGCGAAGCGC TGGCTGGCCG CCTCAACGCC
GGCCAGTTCA TGGGCCTGAT GACCTCGATG ATGGCCATCA TTCCCTCGCT GCGCCGCCTG
ACCAGCGTGC AGACCTCCAT CTCGCGGGGT GTAGCTGCCG CCGAACGCCT GTTCAGCATC
CTCGACATGC CGGTCGAGCG CGACGAAGGC CGAAATGCAG TGCAGCGCGT GCGCGGTGAA
CTGGCGTTCG ACCACGTCAT GCTGCGCTAC CGCGAGGACA GCGGCATTGC CCTGGACGAC
ATCAGTTTCG TCGCCAAGCC GGGTACGGTC ACCGCCATCG TCGGCCGTTC CGGTAGCGGC
AAGACCAGCC TGATCCGGCT GGTGCCGCGC TTCTACGAAC CCAGTGGCGG GCGCATCACC
CTTGATGGCG TGGCGCTGGA TGACTATCCG TTGGCCGACC TGCGCCGCCA GGTGGCAATG
GTCGGGCAGA AGGTCATGCT GTTCGACGAC ACCATCGCCG CCAACATCGC CTATGGCATG
GACGCGAGCG TTGAACAGAT CCGTGCAGCG GCTGAAGCTG CCAACGCGTG GGAATTCATC
GAGCGCATGC CGCAGCAGCT GCAGACCCCG GTCGGCGAGA ACGGCGCACT GTTGTCCGGC
GGCCAGCGCC AGCGCCTGGC GATCGCCCGT GCGATCCTGC GCGATGCGCC GATCCTGATC
CTGGACGAAG CCACCGCCGC GCTCGACAAC GAATCCGAGC GCCTGGTGCA GGACGCGCTG
CAGCGCCTGA TGCCCGAGCG CACCACGCTG GTCATCGCGC ACCGCCTGTC GACCATCGAG
CATGCCGACC AGGTGCTGGT GATGGATCAC GGCCGCATCG TCGAGCGTGG CACTCACAAG
GAACTTCTGA CCATGGGCGG GCTGTACCAG CATCTGCACA GCATGCAGTT CCGCGAAAGG
CAGGACTGA
 
Protein sequence
MSSNHAPVWP IYKRLLGYTR AYWVFMVAAV IAMVVEALAG YHFTKLMEPL VNRGFVNPEP 
RMAVILPLTI LGLFLMRSVA TWVSDYALAK TGRSVVRDLR EQVLAKYLHL PSSHFDTEAT
PVMVSRLNFD TEQVTQASAD ALKTVVADTL TIIAMLAVML QMSVKVTVAM LVVVPLIGVI
VSYVGKRYRR ISRGIQDGMG SMAQTAEQSL AAQQEVKVHG TQQHEISRYS RLANRMLSLN
MKVEVTRAAA SSVVQFLAAL ALAVIVWVST REALAGRLNA GQFMGLMTSM MAIIPSLRRL
TSVQTSISRG VAAAERLFSI LDMPVERDEG RNAVQRVRGE LAFDHVMLRY REDSGIALDD
ISFVAKPGTV TAIVGRSGSG KTSLIRLVPR FYEPSGGRIT LDGVALDDYP LADLRRQVAM
VGQKVMLFDD TIAANIAYGM DASVEQIRAA AEAANAWEFI ERMPQQLQTP VGENGALLSG
GQRQRLAIAR AILRDAPILI LDEATAALDN ESERLVQDAL QRLMPERTTL VIAHRLSTIE
HADQVLVMDH GRIVERGTHK ELLTMGGLYQ HLHSMQFRER QD