Gene Smal_1297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1297 
Symbol 
ID6475152 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp1479531 
End bp1481489 
Gene Length1959 bp 
Protein Length652 aa 
Translation table11 
GC content68% 
IMG OID642730465 
ProductABC transporter related 
Protein accessionYP_002027685 
Protein GI194365075 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component
[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACGA CGGCGCCGCT GCTGCGCCTG CGTGACCTGC GACGCGAATT CCCGGCCGGC 
GACGATGTGA TCGCCGTGCT GCGTGACGTC AACCTCGACA TCCACGCCGG TGAGATGGTG
GCCATCGTCG GCCAGTCCGG CTCAGGCAAG TCGACGCTGA TGAACATCCT CGGCTGCCTC
GATCGTCCCA CCCGTGGCAG CTACCAGGTG GCCGGCCGCG AAACCGGGAA GATGGCGCCG
GACGAGCTGG CCGAACTGCG CCGCGAGCAT TTCGGCTTCA TCTTCCAGCG CTATCACCTG
TTGGGCGACC TCGATGCACG CGGCAACGTG GAAGTGCCGG CGGTGTACGC CGGCAGCCCC
GGCCCGGTGC GCAACGCGCG TGCCGAACAA CTGCTGCAGC GGCTGGGCCT GAGCGACCGC
ATGCACCACA AGCCGGGCCA GCTGTCCGGC GGCCAGCAGC AGCGCGTGTC GATCGCCCGT
GCCCTGATGA ACGGCGGCGA GGTGATCCTG GCCGACGAAC CGACCGGCGC GCTCGACACG
AAATCCGGCG AGGAAGTGAT GGCGATCCTC GGCGAGCTGC ACGCCGAAGG CCACACCATC
ATCATCGTCA CCCACGACAT GAGCGTGGCC GAACACGCGC AGCGCATCAT CGAGATCCGC
GACGGCGAGA TCATCGCCGA CCGCGCCAAT CCGAATGCAC CGACCTACCG CGCGCAGCGC
GAGGCCAGCA CCGGCGTCGC CCGCGGCAAC AGCTGGCGGG CCGCGCGCGA CCGCTTCACC
GAAGCATTCC GCATGGCGTT GCTGGCGATG AATGCACATC GGCTGCGCAC CTTCCTGACC
ATGCTCGGCA TCATCATCGG TATCGCCTCG GTGGTCTCGG TGGTGGCGCT GGGCAACGGC
TCGCAGCAGC AGATCCTGCA GAACATCAGC GCGCTCGGCA CCAACACCAT CGATGTCTAC
CCCGGCCGTG GTTTCGGCGA CATGCGCTCG GCCCGCGTGC AGACGCTCAA AGCCAGTGAT
GCCGATGCGC TGGCCCGGCA GAGCTACGTC GACAGCTCCA CGCCCAGCGT GTCGACCTCG
GTCACCGCGC GTTACCGCAA CCAGTCCTCC ACCGCCCAGG TCAGCGGCGT TGGCGAGCAG
TTCTTCCGGG TCAAGGGCGT GACCCTGCTC AGCGGCAGCT TCTTCGACAG TGACGCGGTG
AAGGGCCTCG GCCAGGTCGC GGTGATCGAC GAGAACACCC AGGCCCAGTT CTTCCCCGAT
ACCGACCCGA TCGGCCAGGT GATCCTGCTC GGCAACGTGC CGGCGCGCGT GGTCGGCGTG
GCCAAGCGCC AGAGCTTCGG GTTCGGCGGC AGCACCAGCC TGAGCGTGTG GCTGCCCTAC
ACCACGGTGA TGTCGCGCAT GCTCGGCCAG AGCCACGTGT CCAGCATTAC CGTGCGCGTG
GACGACGCCA CGCCGATGGA TGCGGCGCAG GAAGCGATCA CCCGCCTGTT GACGATGCGC
CATGGCACCG AGGACTTCTT CCTCAGCAAC AGCGCCGAGA TCCGCCAGAC CATCGAGCAG
ACCACGCGCA CGATGACCCT GCTGATCGGC GCCATCGCCG CCATCGCACT GCTGGTCGGT
GGTATCGGCG TGATGAACAT CATGCTGGTG TCGGTGACCG AGCGTACCCG CGAGATCGGC
GTGCGCATGG CCGTCGGTGC ACGGCAGAGT GATATCCGCC AGCAGTTCCT GATCGAAGCA
GTGCTGGTGT GCCTGCTCGG CGGCGTGCTC GGCATCGGCC TGGCCCTGCT GCTGGGCTCG
ATGATCGGCC GCTTCGCCAG CGACTTCCAG GTGCTGTTCT CCACCGCCTC GATCGTTGCC
GCGTTCGCCT GCTCGACCCT GATCGGCGTG GCGTTCGGCT TCCTGCCCGC GCGCAACGCC
GCGCAGCTCG ACCCGGTGGA GGCCCTGGCC CGCGAATGA
 
Protein sequence
MSTTAPLLRL RDLRREFPAG DDVIAVLRDV NLDIHAGEMV AIVGQSGSGK STLMNILGCL 
DRPTRGSYQV AGRETGKMAP DELAELRREH FGFIFQRYHL LGDLDARGNV EVPAVYAGSP
GPVRNARAEQ LLQRLGLSDR MHHKPGQLSG GQQQRVSIAR ALMNGGEVIL ADEPTGALDT
KSGEEVMAIL GELHAEGHTI IIVTHDMSVA EHAQRIIEIR DGEIIADRAN PNAPTYRAQR
EASTGVARGN SWRAARDRFT EAFRMALLAM NAHRLRTFLT MLGIIIGIAS VVSVVALGNG
SQQQILQNIS ALGTNTIDVY PGRGFGDMRS ARVQTLKASD ADALARQSYV DSSTPSVSTS
VTARYRNQSS TAQVSGVGEQ FFRVKGVTLL SGSFFDSDAV KGLGQVAVID ENTQAQFFPD
TDPIGQVILL GNVPARVVGV AKRQSFGFGG STSLSVWLPY TTVMSRMLGQ SHVSSITVRV
DDATPMDAAQ EAITRLLTMR HGTEDFFLSN SAEIRQTIEQ TTRTMTLLIG AIAAIALLVG
GIGVMNIMLV SVTERTREIG VRMAVGARQS DIRQQFLIEA VLVCLLGGVL GIGLALLLGS
MIGRFASDFQ VLFSTASIVA AFACSTLIGV AFGFLPARNA AQLDPVEALA RE