| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1201 |
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| Symbol | |
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| ID | 6475053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | - |
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| Start bp | 1363164 |
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| End bp | 1366628 |
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| Gene Length | 3465 bp |
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| Protein Length | 1154 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642730366 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002027589 |
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| Protein GI | 194364979 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.656597 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0999319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCGTA CCTCATACCC CGCCCCGCCG CTGCCGCGCG CCGGCCAGCT CCGCGCCTGG
TGGCGCGCTC CCGCATCGCC GACCGCCCTG GCCTGGTATC TGGCCCAGGC CGCGCGTGCG
CACGACGCCC CGCTGCTGGT GATCGCCCGT GACAACCACG GCGCCAACCA GCTCGAAGCC
GACCTGCAGA CCCTGCTCGG CGGCGACCCT GCCCTGCCAG TGGTTGCCTT CCCGGACTGG
GAAACCCTGC CCTACGACCG CTTCAGCCCG CATCCGGACA TCATCTCGCA GCGCCTGTCC
GCCCTGCACC GCCTGCCCGA GCTGAAACGC GGCCTGGTGA TCGTGCCGGT GCAGACCCTG
CTGCAGCAGC TGGCCCCGCG CAGCTATGTG ATCGGTGGCA GCTTCGACCT GAAGGTTGGC
CAGCGCCTGG ACCTGGAAGC CGAGAAGCGC CGCCTGGAAA GCGCCGGCTA CCGCAACGTG
CCTCAGGTGA TGGACCCGGG CGACTTCGCG GTGCGCGGCG GCCTGCTCGA CGTGTACCCG
ATGGGTGCCG AGGAGCCGCT GCGGGTGGAG CTGCTGGACG AGGACATCGA CTCGATCCGT
GCCTTCGATC CGGAAAGCCA GCGCTCGCTG GACAAGGTCG AGGCGGTGCA CATGCTGCCG
GGCCGCGAAG TGCCGATGGA CGAAGCCAGC ATCGCCCGCG TGCTGGCCAC GCTGCGCGAG
CGCTTCGATG TCGATACCCG GCGCAGTTCG CTGTACCAGG ACCTGAAATC CGGGCTGGCC
CCGGCCGGCG TCGAGTATTA CCTGCCGCTG TTCTTCGAAC GCACCGCCAC CCTGTTCGAC
TATCTGCCCG AAGGCAGCCT GCCCGTGGTC TGCGTGGGCG CTGGCGAAGC AGCAGAAACG
TTCTGGGCGC AGACCGCCGA GCGATACGAG CAGCGCCGCC ACGACGTCGA ACGGCCGCTG
CTGCCGCCGT CGGCGCTGTA CCTGTCGCCG GAACTGCTGC GCGAACGACT GAACGACACT
CCTCGCATCG AGGTATGGTC GGCTGACCAC GCGCGCATCG CAGATGCCCA TGCGCTGGGT
GACCAGCCGC TGCCGCCGCT GCCGGTGGCC GCGCGCGAAG CACCGGCCGG CGATGCGCTG
AAGTCCTTCC TCGGCCACTA CCCGGGCCGC GTGCTGATCG CTGCCGATTC ACCCGGCCGC
CGTGAGGCAT TGCTGGAAGT GCTGCAGGCC GCCGAACTGA AACCACCGGT AGTGGCCGAC
CTGCCCAGCT TCCTCGCCGA CGACGCGCGC TTCGCGATCG CGGTGGCGCC GCTGGAGGAT
GGCTTTGCGC TGGACGATCC GCGCATCGCG GTACTGACCG AGCGCCAGCT GTTCCCTGAG
CGCGCCGGCA GCACCCGCCG CACGCGCCGT GCCGGCCGCG AACCGGAAGC GATCATCCGC
GACCTCGGTG AACTGACCGA GGGTGCGCCG ATCGTGCACG AGGACCATGG CGTCGGCCGC
TACCGTGGCC TGATCGCGAT GGACGTCGGC GGCATGCCCG GCGAATTCCT GGAAATCGAA
TACGCCAAGG GCGACCGCTT GTATGTGCCG GTGGCCCAGC TGCACCTGAT CAGCCGCTAC
TCCGGCGCTT CAGCGGAAAC CGCGCCACTG CATTCGCTCG GTGGCGAGCA GTGGAGCAAG
GCCAAGCGCA AGGCCGCCGA GAAGGTGCGC GATGTGGCTG CGGAGCTGCT GGAGATCCAG
GCCCGTCGCC AGGCGCGTGC CGGCCTCGCA CTGCAGGTGG ACCGCGCGAT GTACGAGCCG
TTCGCCGCCG GTTTCCCGTT CGAAGAAACC CCGGACCAGT TGGCTGCGAT CGACGCCACC
CTGCGCGACC TGTCCAGCAG CCAGCCGATG GACCGCGTGG TCTGCGGCGA CGTCGGCTTC
GGCAAGACCG AGGTCGCCGT GCGCGCCGCG TTCGCCGCCG CCAGTGCCGG CAAGCAGGTG
GCCGTACTGG TGCCGACCAC GCTGCTGGCC GAGCAGCATT ACCGCAACTT CCGCGACCGC
TTCGCCGATT ACCCGATGAA GGTCGAGGTG CTGTCGCGCT TCAAGAGCAC CAAGGAAATC
AAGGCGGAGC TGGAGAAGGT TGCCGCCGGC ACCATCGACG TCATTGTCGG CACCCATCGC
CTGCTGCAGC CGGACGTGAA GTTCAAGGAC CTGGGCATGG TCATCGTCGA CGAGGAGCAG
CGTTTCGGTG TGCGCCAGAA GGAAGCCTTG AAGGCGCTGC GCGCCAACGT GCACCTGCTG
ACCCTGACCG CTACGCCGAT CCCGCGCACG CTCAACATGG CCATGGCCGG CCTGCGCGAC
CTGTCGATCA TCGCCACGCC GCCGCCGAAC CGGCTGGCGG TGCAGACCTT CATCACCCAG
TGGGACAACG CGCTGCTGCG CGAAGCCTTC CAGCGCGAGC TGGCACGCGG TGGCCAGCTG
TACTTCCTGC ACAACGACGT GGAAAGCATC GGCCGCATGC AGCGCGAGCT GTCCGAGCTG
GTGCCGGAGG CGCGCATCGG CATCGCCCAC GGGCAGATGC CGGAGCGCGA GCTGGAAAAG
GTGATGCTGG ATTTCCAGAA GCAGCGCTTC AACGTGCTGC TGTCGACCAC GATCATCGAA
TCGGGCATCG ACATCCCCAA CGCCAACACC ATCATCATCA ACCGCGCCGA TCGCTTCGGC
CTGGCCCAGC TGCACCAGCT GCGCGGCCGT GTCGGTCGTT CGCACCACCG TGCCTACGCC
TACCTGGTTG CCCCCGACCG TCGTTCGATC ACCCCGGATG CCGAAAAGCG CCTGGAAGCA
ATCGCGTCGA TGGACGAGCT GGGCGCCGGC TTCACCCTGG CCACGCACGA TCTGGAAATC
CGCGGCGCCG GTGAACTGCT GGGCGAAGAC CAGAGCGGGC AGATGGCCGA GGTCGGCTTC
AGCCTCTACA CCGAGCTGCT GGAACGCGCG GTTCGCAGCA TCAAGCAGGG CAAGCTGCCC
GACCTGGATG CCGGCGAGGA AGTGCGCGGT GCCGAGGTCG AGCTGCACGT GCCGGCACTG
ATTCCGGAAG ACTACCTCCC GGACGTGCAC ACCCGCCTGA CCCTGTACAA GCGCATTTCC
AGCGCGCGCG ACAGCGATGC ACTGCGCGAA CTGCAGGTGG AGATGATCGA CCGCTTCGGC
CTGCTGCCGG ATGCGGCCAA GCACCTGTTC GCCATCGCCG AGCTGAAGCT GAAAGCCAAC
ACGCTGGGCA TCCGCAAGCT GGACCTGGGC GAGAGCGGTG GCCGCATCGT GTTCGAGTCC
AAGCCGAACA TCGACCCGAT GGCAGTGATC CAGCTGATCC AGAAACAACC GAACCTGTAC
GCCATGGAAG GGCCCGACAA GCTACGCATC AAGCACCCGC TGCCGCTGCC GGAAGACCGC
TTCAATGCGG CCCGCGCCCT CCTGACCACC CTCGCCCCGG GTTGA
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| Protein sequence | MSRTSYPAPP LPRAGQLRAW WRAPASPTAL AWYLAQAARA HDAPLLVIAR DNHGANQLEA
DLQTLLGGDP ALPVVAFPDW ETLPYDRFSP HPDIISQRLS ALHRLPELKR GLVIVPVQTL
LQQLAPRSYV IGGSFDLKVG QRLDLEAEKR RLESAGYRNV PQVMDPGDFA VRGGLLDVYP
MGAEEPLRVE LLDEDIDSIR AFDPESQRSL DKVEAVHMLP GREVPMDEAS IARVLATLRE
RFDVDTRRSS LYQDLKSGLA PAGVEYYLPL FFERTATLFD YLPEGSLPVV CVGAGEAAET
FWAQTAERYE QRRHDVERPL LPPSALYLSP ELLRERLNDT PRIEVWSADH ARIADAHALG
DQPLPPLPVA AREAPAGDAL KSFLGHYPGR VLIAADSPGR REALLEVLQA AELKPPVVAD
LPSFLADDAR FAIAVAPLED GFALDDPRIA VLTERQLFPE RAGSTRRTRR AGREPEAIIR
DLGELTEGAP IVHEDHGVGR YRGLIAMDVG GMPGEFLEIE YAKGDRLYVP VAQLHLISRY
SGASAETAPL HSLGGEQWSK AKRKAAEKVR DVAAELLEIQ ARRQARAGLA LQVDRAMYEP
FAAGFPFEET PDQLAAIDAT LRDLSSSQPM DRVVCGDVGF GKTEVAVRAA FAAASAGKQV
AVLVPTTLLA EQHYRNFRDR FADYPMKVEV LSRFKSTKEI KAELEKVAAG TIDVIVGTHR
LLQPDVKFKD LGMVIVDEEQ RFGVRQKEAL KALRANVHLL TLTATPIPRT LNMAMAGLRD
LSIIATPPPN RLAVQTFITQ WDNALLREAF QRELARGGQL YFLHNDVESI GRMQRELSEL
VPEARIGIAH GQMPERELEK VMLDFQKQRF NVLLSTTIIE SGIDIPNANT IIINRADRFG
LAQLHQLRGR VGRSHHRAYA YLVAPDRRSI TPDAEKRLEA IASMDELGAG FTLATHDLEI
RGAGELLGED QSGQMAEVGF SLYTELLERA VRSIKQGKLP DLDAGEEVRG AEVELHVPAL
IPEDYLPDVH TRLTLYKRIS SARDSDALRE LQVEMIDRFG LLPDAAKHLF AIAELKLKAN
TLGIRKLDLG ESGGRIVFES KPNIDPMAVI QLIQKQPNLY AMEGPDKLRI KHPLPLPEDR
FNAARALLTT LAPG
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