Gene Smal_1197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1197 
Symbol 
ID6475049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand- 
Start bp1358627 
End bp1359310 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content69% 
IMG OID642730362 
ProductDeoxyribonuclease V 
Protein accessionYP_002027585 
Protein GI194364975 
COG category[L] Replication, recombination and repair 
COG ID[COG1515] Deoxyinosine 3'endonuclease (endonuclease V) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.159778 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACGG TGATCGACCC CGGACGCTGG GAAGGCAGCG TCGCCGCGGC CCGCGAGCAG 
CAGATCCAGC TGGCCGGTCG CGTGGAACGC CAGGACCGGC TGCCACGCAC GGTGCGCTGG 
CTGGCCGGGC TGGATGTCGG CTTCGAGGAT GACGGCGCCA CCACCCGTGC CGCTGCGGTA 
CTTCTGGATG CGAAGACGCT GCTGCCTGTA ACGCAGGAAA TCGCGCGCAT CCCTACTGTG 
ATGCCCTACA TCCCCGGCCT GCTCAGCTTC CGCGAGTTGC CGGCGCTGCT GGCCGCATTG 
GCGCTGCTGC CGCGCGCACC GGACCTGGTG TTCGTCGACG GCCACGGCAT CAGCCATCCG 
CGGCGGCTCG GCATCGCCGC GCACCTGGGC GTGGTCACCG ATCTGCCAAG CATCGGCGTG 
GCCAAATCGA AACTGGTCGG CCGCTTCGTC GAGCCGGGTG CCGAGGCCGG TTCGCATACA 
CCGCTGCTGG ACGGTGACGA GCAGCTCGGC TGGGTGCTGC GCAGTAAGGT GAAATGCAAG 
CCGCTGTTCG TGGCCGGTGG CCATCGGGTC AGCGCCGATA CTGCGCTGCA CTGGGTGCAG 
CGCACGTTGC GCGGATATCG GCTGCCGGAG CCGACCCGGC TGGCGGATCG GCTGGCCTCG 
CGGCGGGGTA GAGTCGACTG TTAG
 
Protein sequence
MNTVIDPGRW EGSVAAAREQ QIQLAGRVER QDRLPRTVRW LAGLDVGFED DGATTRAAAV 
LLDAKTLLPV TQEIARIPTV MPYIPGLLSF RELPALLAAL ALLPRAPDLV FVDGHGISHP 
RRLGIAAHLG VVTDLPSIGV AKSKLVGRFV EPGAEAGSHT PLLDGDEQLG WVLRSKVKCK 
PLFVAGGHRV SADTALHWVQ RTLRGYRLPE PTRLADRLAS RRGRVDC