Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smal_0954 |
Symbol | |
ID | 6478309 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stenotrophomonas maltophilia R551-3 |
Kingdom | Bacteria |
Replicon accession | NC_011071 |
Strand | - |
Start bp | 1098250 |
End bp | 1099674 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642730118 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_002027342 |
Protein GI | 194364732 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.550779 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACTC GGCTGCAGAC ATCGTTGGGA CAGCAGCTGG TGCTCACGCC CCAGCTGCAA CAGGCGATCA AGCTGCTGCA GATGTCCAGC ACCGAGCTGG AACTGGAAAT CGCGCAGGCA GTGGAAAGCA ATCCACTGCT GGACTGGGCC GACAGCAGCG ACAGCAGCAG CGCCGCCAAC GAAACCAGTG ACAACCCCGA CGGCGATGCA GCGGCCGAAC GTGCCGACAA CGGCGACGAC TGGGCGCCGG CCGAACTGGA CTGGAGCGCG GCCGGCAGCG GCGGCAGCTT CGACGATGAC GACGATACCG GCAGTGCCGC CGAACGCGTG GCCGAAACCG AAACCCTGGC CGATCATCTG CTGTGGCAGC TGCACCTGTC GCACCTGACC GCACGTGATC GCAGCATCGG TGCCGCACTG ATCGATGCAC TGGACGACGA TGGCTACCTG CGCGAACCGC TGGCAGGCAT CGCCGAAACC CTGCTGCCGG CCATCCATGC CGACCAGGAC GAGATTCTTG CCGTGCTGCA CCGGATCCAG CGTTTCGATC CGGTCGGCGC GGCCGCGCGC ACCCTCGGCG AATGCCTGCA GCTGCAGCTG GAGGTGCTGG ACGACACCAC ACCGGGCCTG GCATTGGCGC GACAGATTGC CGCGGGCCCG CTGGAACGGT TGCCGCGCAG CGGCGTGGCC GGGCTGGCCC ACGAGTTGAA ACTGCCGCTG GCCGAGGTCG AGACTGCAGT GACCCTGCTG CGTTCGCTGG ATCCTCGGCC GGGCACGCAG ATCGCCCCCC TGTCGCAGGA CACCTACGTG GTACCCGATG TCGTGGTGTG GCGGCAGAAC GGCGTGTGGC GCGCTGCACT GGCCGCGCAT GCCGGGCCAA GGGTGGTGAT CCACCGCGGC TACGAACAGC TGATCCGCCG CTGTGGCGAG GCCGATGCCG GCTACCTGCG TGCACAGCTG CAGGAAGCGC GCTGGCTGCT GAAAGGGCTG CAGCAGCGTG GCGAAACCCT GCTGCGCGTC GTGCGCAGCC TGATCCTGCA ACAGGCTGGC TTCCTTGAAT TCGGCGAACA GGCGCTGCGC CCTCTGACAC TGCGCGAGAT CGCCGCCGAG CTCGGCCTGC ACGAATCGAC GGTGTCGCGC GCGATTGCCC GCAAGCACGT GCGTACGCCA CGCGGCACCC TGCCCCTGCG CGCCTTCTTC GCCTCCGGCA TCGACACCGA AGGCGGCGGC GAGGCCTCCA GCACGGCCAT CCAGGCGATG ATCCGACGCC TGATCGACGA CGAGAACCCA CGCAAGCCGC TTTCTGACGC CAAGCTGGCT GACCTGCTCA AATCGTCGGG AATTCCAGTA GCGCGGCGCA CCGTGGCGAA GTATCGTGAA GCCATGAACA TCTCCGCCTC GCACGAAAGG GTCAGAATCG CTTGA
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Protein sequence | MKTRLQTSLG QQLVLTPQLQ QAIKLLQMSS TELELEIAQA VESNPLLDWA DSSDSSSAAN ETSDNPDGDA AAERADNGDD WAPAELDWSA AGSGGSFDDD DDTGSAAERV AETETLADHL LWQLHLSHLT ARDRSIGAAL IDALDDDGYL REPLAGIAET LLPAIHADQD EILAVLHRIQ RFDPVGAAAR TLGECLQLQL EVLDDTTPGL ALARQIAAGP LERLPRSGVA GLAHELKLPL AEVETAVTLL RSLDPRPGTQ IAPLSQDTYV VPDVVVWRQN GVWRAALAAH AGPRVVIHRG YEQLIRRCGE ADAGYLRAQL QEARWLLKGL QQRGETLLRV VRSLILQQAG FLEFGEQALR PLTLREIAAE LGLHESTVSR AIARKHVRTP RGTLPLRAFF ASGIDTEGGG EASSTAIQAM IRRLIDDENP RKPLSDAKLA DLLKSSGIPV ARRTVAKYRE AMNISASHER VRIA
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