| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_0026 |
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| Symbol | |
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| ID | 6477502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | + |
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| Start bp | 31048 |
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| End bp | 33525 |
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| Gene Length | 2478 bp |
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| Protein Length | 825 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642729159 |
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| Product | DNA ligase D |
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| Protein accession | YP_002026414 |
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| Protein GI | 194363804 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.282762 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000000359668 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGCTGC ACCAGTACCG GCGCAAGCGC AGACTGGGTG GTGGCGCCGG ACAGACGCCG
GAGCCTGACG ACACGCCCGC ACGCGGCGAT CCGAAGCGGC GGCCGACCTT CGTCATCCAG
CTGCATCACG CAAGCTCGCG TCACTATGAC TTCCGCCTGG AAATGGACGG CGTACTGAAG
AGCTGGGCCG TGCCCAAGGG ACCTTCGCTG CGCGTCGGTG AGAAGCGGCT GGCCGTGGAG
GTGGAAGATC ACCCGTTGTC CTACGCCGGT TTCGAAGGAG ACATTCCTGA AGGCCACTAT
GGCGCTGGCC ACGTGGATGT CTTCGATCAC GGCACCTGGG CCTGTGAAGG TGATCCACTG
CAGGCGCTGG CGGCTGGAAA GATCGACTTC GTGCTGCACG GGCAACGCCT GGCCGGTGGC
TGGAAGCTGG TGCGTACGGC AATGAAAGGG CGTCAGGTGC AGTGGCTGCT GATCAAGCGC
GACGATGGCG AAGCGCGCGA CGCCGAGGCG GATGACCTGC TGACGGCACC GATGCCGAAA
CGAGCGCCTG CGGCGAAGAA GCGTTCCGTA GAGCGTGCTG CAGCTGCCGC ACGCACGACC
ACACGCAAGG CTGATGCGCG CTGGCATGCG CGCGCGCTGA AACTGGACGG TGCACGCGAT
ACGCCCTATC CACGCGCGTT CAAACCGCAG TTGACCGATC ATCGCGACAG CGCGCCGGAC
GGCGCGCGCT GGCTGCACGA GATCAAGTGG GATGGTTATC GCCTGCTGGC CGATCTGCAC
GATGGCGAGG TGAAGCTCCG CTCCCGCAAC GGCCTGGATT GGACTGATGA TTTTCCCGAG
CTGGTACAGG CCGTGCTGGC ACTGCCGGTG CGTGATGCGC GGCTTGACGG CGAACTGGTG
GTGCTGGATC CGGATGGACG CAGCGACTTC GCAGCGCTGC AGCGGGTGAT CGACGGTAGT
TCGAAGCAAC CGCTGCGCTA CATCGTGTTC GATCTTCCGG GGGTGGCCGG CGTGGACATC
AGTCGTGTGC CGTTGCTGGA ACGCAAGGCG CTGCTGAAGG ATCTGATCGG GCCGGCGCCC
GGCACTCTGG CCTTCAGCGA ACACGTGATC GACCATGGAC CGCAGGTGTT CGACGCCAGC
GGTGGGGCCG GCTTCGAAGG CATCGTCAGC AAGCAGGTGG ATGCGCCGTA TGTGAACACC
CGCGCGCGCA GCTGGGTCAA AGTGAAGCAC GAAGACACCG ACGAGTTCGT GATTGTCGGC
CACACGGCAC CCAAGGGTTC CCGGGTGGGA TTTGGTTCGC TGCTTCTGGC CACGCCGGAC
AAGGCTGGCC TGCGCTATGT GGGCCGCGTT GGCACCGGCT TCGACGACGA TAGCCTGCGC
GCGCTGCTCA AGGCACTGCA GCCGTTGGCA GTGAATGCAC CGGTGCTGCA GCTGCCAGCG
CATGTGCCGT TCCGTGCCGC CAGCGTGCGC TGGGTGAAAC CGGTGACGGT GGCGGAGGTG
GCATTCCGTG GCTGGGGCAA GGAAGGCCTG CTGCGCCAGG CCAGTTTCAA GCGGCTGCGC
AGCGACAAGC AGAAAGAGGA TCTGGGTATG AGCACAGCCG ATACCGAAGC CGGAGGCGAG
GTCCAGATCA CTCATCCAGA GCGGGTGGTG TTTCCAAAGG AGAAGCTGAG CAAGGGCGAC
GTGGCCGACT ACTACCAGCG CGTGGCGCGT TGGATCCTGC CCGAACTTGC CGGACGTCCG
CTGTCACTGC TCCGGTGCCC GGACGGCGTG GGCAGGGCCT GCTTCTTCCA GAAGCACCAC
GGTCCCGGCC TGGGCGATGC CGTGCACGCG GTTCCGCTGC AACAGAAGAG CGGCCGCGAG
GATTATGTCT ATATCGACGA TGCACGGGGC CTGTTGCAGC TGGTGCAGAT GAACACCCTG
GAGCTGCATC CTTGGGGCGC GACCGTGATC GATCCAGAGC ATCCGGATCG CCTGGTGTTC
GATCTCGATC CCGGCGAAGG CGTCAGCTGG GCACAGGTGA AAGCCGGTGC ACGCGATGTG
CGTGACCGCC TGCAGCAGGT GGGCCTGAAG AGCTTCGTAC GCCTGTCCGG TGGTAAGGGC
GTGCACGTGG TGGTGCCGAT GCAGCCCAAG GCAGGCTGGG ACGAGGCGAA GGCGTTCTGC
GAGGCGTTCG CGCAGGCAAT GGCGCTGGAG CAGCCTGATC GCTACGTGGC GACGATGAGC
AAGGCAAAGC GCAATGGCGT CATCTTCATC GACTGGCTGC GCAATACGCG GGGGGCCACC
AGCGTCTGTT CGTGGTCGCT GCGCGCGCGC GATGGTGCGG GCGTGGCGGT GCCGCTGCGC
TGGGAAGAGC TGGCCCGGGT GAGCGCGGCT GACGCGTTTC CGATGGCCAA GGCGCTGGCG
CGTGCCAAGC GGCTGAAGGG TGACCCATGG CAGGGCATTG AACGGTTGAA GCAGACGCTG
CCGTCGCTGA AGCGGTAG
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| Protein sequence | MSLHQYRRKR RLGGGAGQTP EPDDTPARGD PKRRPTFVIQ LHHASSRHYD FRLEMDGVLK
SWAVPKGPSL RVGEKRLAVE VEDHPLSYAG FEGDIPEGHY GAGHVDVFDH GTWACEGDPL
QALAAGKIDF VLHGQRLAGG WKLVRTAMKG RQVQWLLIKR DDGEARDAEA DDLLTAPMPK
RAPAAKKRSV ERAAAAARTT TRKADARWHA RALKLDGARD TPYPRAFKPQ LTDHRDSAPD
GARWLHEIKW DGYRLLADLH DGEVKLRSRN GLDWTDDFPE LVQAVLALPV RDARLDGELV
VLDPDGRSDF AALQRVIDGS SKQPLRYIVF DLPGVAGVDI SRVPLLERKA LLKDLIGPAP
GTLAFSEHVI DHGPQVFDAS GGAGFEGIVS KQVDAPYVNT RARSWVKVKH EDTDEFVIVG
HTAPKGSRVG FGSLLLATPD KAGLRYVGRV GTGFDDDSLR ALLKALQPLA VNAPVLQLPA
HVPFRAASVR WVKPVTVAEV AFRGWGKEGL LRQASFKRLR SDKQKEDLGM STADTEAGGE
VQITHPERVV FPKEKLSKGD VADYYQRVAR WILPELAGRP LSLLRCPDGV GRACFFQKHH
GPGLGDAVHA VPLQQKSGRE DYVYIDDARG LLQLVQMNTL ELHPWGATVI DPEHPDRLVF
DLDPGEGVSW AQVKAGARDV RDRLQQVGLK SFVRLSGGKG VHVVVPMQPK AGWDEAKAFC
EAFAQAMALE QPDRYVATMS KAKRNGVIFI DWLRNTRGAT SVCSWSLRAR DGAGVAVPLR
WEELARVSAA DAFPMAKALA RAKRLKGDPW QGIERLKQTL PSLKR
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