Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smal_0016 |
Symbol | |
ID | 6477492 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stenotrophomonas maltophilia R551-3 |
Kingdom | Bacteria |
Replicon accession | NC_011071 |
Strand | + |
Start bp | 17350 |
End bp | 20574 |
Gene Length | 3225 bp |
Protein Length | 1074 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642729149 |
Product | YD repeat protein |
Protein accession | YP_002026404 |
Protein GI | 194363794 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.15112 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0000418837 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGCACT TTGCAACACG GAACACTCTG AAGTCCCGTC TTCTTCTTCT GCCGCTGCTT TCCCTGCCGA TGACATTGGC AACGGCGGCA AACACTCTCG AAACCGTTCA AGTCACCGCC AAACGCCCTG CTGGAGGTGG CGGTGTAGGT GGTTTTGGAT TTGGCGGCGG CAGTGGTGTC CACCTGTCCG AGTCTCAAAT GGACAATGGC GGCGGCGGCG GTGCAATTCC GACCGAAACC GCGAAGGAGC AGCCGACCGA TGACAAAGAG AAGGACTGCA ATGGTCGTAA GGGCAATCCC GTCGTGCTCT ACAGCGGCAA CAAGGTTGAA CCAGAACTTG ATTTCGCCAG TCAGGGCGAA ATGGGACTGT TCCTGCAGCG CAACTACAAT CACTATTGGA GCGCGACCGG GCTGTTCGGC AATCACTGGC TGAGCAACTT CGATTATTCG CTCGCATTCA CCGATGCAAA TCAGCTGGCG TGGGTGCAAC GGCCTGACGG TCGCCGCATC AAGTACCTCA AGGATCCTGC CAGCGGTCGC TGGTATGAGG ACAAGGCCCA GCCCATCGCG TACCTCTCCG CGAACGGCGA TGGCACGTTT ACGCTTCGAA ACGAAAACAA CGGTACGGAG ACCTACAACG TCGAGGGCTA TATCACCCGA CTCAGCAATG AGCAGGGCGT GAGCTGGACG TTCTCCTATG CTGACCGCTA TCTGCAGAAG GTGACCCACT CCTCGGGACG CAGCGTCAGC TTTGGTTGGG CCAATGGACA GGTAAGCCAG GTGACCGATC CAGCCGGCAA CGTCTATCGC TACACCTATA CCCCCAATGT TTTCGGGAAC GGACGTGGCC GGCTTGCCAG CTCGACGCTG CCAGGCACAC CAGCGACGAC GATCAGCTAC CACTACGAAG ATGCTCGCTT CCCGGGTGCC CTGACTGGCA AGTCCTTTGA TGGCGTGCGC TATTCCACTT TTGCGTACGA CGCGGAGCGG CGCGCCATCA GCACGGAGCA CAACGGTGGC ATTGAGCGAT TCCGCTTCAG CTATGCCGTG CGCAGCACCG AACCGGTGCT CCCGCCGCCC GCACCGACTC GACCCGGCGG TGTCCGCGCC GACGAAGAGC GTGGATGGTG CGAACAGCGC ACCGGAGGCT CACGCATCTG CTATCAACCG CGCTCGCTGC CTGTTGACTC GCTGCCGATG GAGAGCGCTC TCGGTATGAC GGCCGCCGCT GCGCCGGGCC TTACGCGGCC CGTCGATATT GATGTCACTG TGATCAACCC TCTTGGCCGT AGCACCACTT ACACGTTCAA GGACGGAAAG ATGGTATCGA CCAAGGGTGA TCCGTCGCCG AACTGCCCTG CCAGCTACAA GGAGCAGAGT TATGACGCCA ATGGATACCC GGATCTGGTC CATGACTTCC AGGACAATCT GACCAACTTC GACTACAGCG CTCAGGGTTA CCTGCTGAAG CGGGTGGAAG CTGTCGGCAG CTCGGCCGAA CGTACAACGT TGCAGGAGTG GGATACCACG CGGAACAGAC TCCTCAAGAC AACGGTGGTG GGTGACCTCG AGGTTGCCTA CTCCTATGAC GATCGCGGAA ACGTGGCCAG CGCAACCGAG CGCAATCTGA CGGCACGTGG CGTACCCAGC CAGACACGAG TGACCCGGAG CACGTATACC TATCACGCAA ACGGATTGAA GGCCTCGATC AAAGTCGATG GACCGCTTGC GCAGGACGAC GTCACCTCCG TGTTCAACGG CCAAGGCGAT CTGACCAGCG TCACCAACGC ACTCGGTCAT ACGATCAGCT ATTCCAACTA CAACGGATTG GGGTTGCCGG GACGCATCGT CAATGCGAAT GGTGGTGTGC GAGAGCTGAC GTATGACGGC CGCGGCCGCG TTGTATCCGA CAGAACCAGT TCGGGAACCG GCTGGGCGAC TACCGCCATT GGCTACACCG CTGCAGGTGA CATCGCCTCG CTTACCCAGC CTGATGGCGT GACAGTCCGC TACGGCTACG ATGCAGGGCG CCGCCTGACA CAGGAAGTCC GTTCGATGGG AGACGGCAAG TGGGCGTGGA TCCGTCATAG CTACAACAAC GCTTCCAATC GCACGCGCAC TGAGGTTTCA CAAACCGACT ATCCGATGGA TACGGTCGTA AAGGGGATGA TTGATGAAAT CACCCACGAC GGCCAGTGGA ACTGGTTCGT TCGAGGTTGG GCCTGCTCCA CCGGATCGGC GGGATCCATC CAGGTGGATG GTTACGCCGA TGGCAACGTC TACCTGGGTA GCACTCAAGC AAACCTTGCC AGCGAGCCAG GAGTTGCCGC GGCGTGCCAA GCATCAGGGA GTGCCTATAG GTATCAGTTG CCGATATCGC TAGCCCAGAG GCAACAGTTG GGCGGTCGCA AGTTTTCCAT CTACGGCCAA TCTCCGCAGG GGCGCGGCCA GGACCGACCG CTTCCGAACT CTGGGGTGCT CGCGATTCCA ACGGCAAAAA TCGTTGGTGA TATCGGCGGC GTGACCCAGG ACGGAAACTG GAACTTCTTC CTGGAAGGCT GGGCCTGCTC GATCGGCGTG GACTCATCGA TCGATGTGCA CGTCTATGCA GGAAACTCCG CTTGGGCAGG GGGCACCTTT GTTGCCAGTG GTCGTGCCAA CCTCGCAACG GACGGCAACG TCGCCAGCGC TTGCCAAGCA CGCGGAAATG CGTATTGGTT CAAGATTCCA CTCGATGGCA ATCTGCGATC AGCGCATGGT GGCAAGGCGC TTTATGTTCA TGGCATCTCG CCGTGGGGTG GTGATCATCT GACCATCAAT CGCTCGGGCA CTTTCACCGT CCCAGCCGTT GTGCGGAGTG CGGAGTTCGT TTCCTTCAAT GCCTATCCCA CCAACATCAC CAATGGACGG CAAAGCACGT TGACCATACA GGTCCGCAAC ACAGGCAACG TCGTATGGGA TGGAAACACT TACCTTGCAT GGGGCCAGGA CCAGCTGGAT CAATCCCGAG CACTGGCCGG GCCGGTGTCC CCTGGAGGGA TTGCATCGTT CAGCATCGAC GTCGCGCCCT ACCACGATGG CATCGGGATC AGGAGCTTTG CATACATTGC CCAGATGGCG ACCAACGGTA TGGCTTGGGG ACCCCGGCCC TACACCATGA TCGCGGTAGA AAACGCGGAT TGGTACTGCC CGCCAAACAG CACCACCTGC GAGGCGCCGA TGTGA
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Protein sequence | MMHFATRNTL KSRLLLLPLL SLPMTLATAA NTLETVQVTA KRPAGGGGVG GFGFGGGSGV HLSESQMDNG GGGGAIPTET AKEQPTDDKE KDCNGRKGNP VVLYSGNKVE PELDFASQGE MGLFLQRNYN HYWSATGLFG NHWLSNFDYS LAFTDANQLA WVQRPDGRRI KYLKDPASGR WYEDKAQPIA YLSANGDGTF TLRNENNGTE TYNVEGYITR LSNEQGVSWT FSYADRYLQK VTHSSGRSVS FGWANGQVSQ VTDPAGNVYR YTYTPNVFGN GRGRLASSTL PGTPATTISY HYEDARFPGA LTGKSFDGVR YSTFAYDAER RAISTEHNGG IERFRFSYAV RSTEPVLPPP APTRPGGVRA DEERGWCEQR TGGSRICYQP RSLPVDSLPM ESALGMTAAA APGLTRPVDI DVTVINPLGR STTYTFKDGK MVSTKGDPSP NCPASYKEQS YDANGYPDLV HDFQDNLTNF DYSAQGYLLK RVEAVGSSAE RTTLQEWDTT RNRLLKTTVV GDLEVAYSYD DRGNVASATE RNLTARGVPS QTRVTRSTYT YHANGLKASI KVDGPLAQDD VTSVFNGQGD LTSVTNALGH TISYSNYNGL GLPGRIVNAN GGVRELTYDG RGRVVSDRTS SGTGWATTAI GYTAAGDIAS LTQPDGVTVR YGYDAGRRLT QEVRSMGDGK WAWIRHSYNN ASNRTRTEVS QTDYPMDTVV KGMIDEITHD GQWNWFVRGW ACSTGSAGSI QVDGYADGNV YLGSTQANLA SEPGVAAACQ ASGSAYRYQL PISLAQRQQL GGRKFSIYGQ SPQGRGQDRP LPNSGVLAIP TAKIVGDIGG VTQDGNWNFF LEGWACSIGV DSSIDVHVYA GNSAWAGGTF VASGRANLAT DGNVASACQA RGNAYWFKIP LDGNLRSAHG GKALYVHGIS PWGGDHLTIN RSGTFTVPAV VRSAEFVSFN AYPTNITNGR QSTLTIQVRN TGNVVWDGNT YLAWGQDQLD QSRALAGPVS PGGIASFSID VAPYHDGIGI RSFAYIAQMA TNGMAWGPRP YTMIAVENAD WYCPPNSTTC EAPM
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