| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2921 |
|---|
| Symbol | |
|---|
| ID | 6462275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 3015046 |
|---|
| End bp | 3016797 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642729066 |
|---|
| Product | 60 kDa inner membrane insertion protein |
|---|
| Protein accession | YP_002019680 |
|---|
| Protein GI | 194337886 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000870087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGAA ATTCGGTAAC CGGCCTTGCA ATTATTGCCG TAATCATGAT CGTCTGGCTT
CAGTTTATGT CGCCAGAGAA AAAACCGCTG CTGCCGTCAA AGACGGTGAA AACAGAGACT
GTGGTGCAGT CCGATGTTCA GGTTCCTGCA GTTTCGATCC CTGCAGCCGA TAATTTTGGT
GTTTTTGCAT CCTCATCCGG AGGTCAGGAA AAACTCCTGA AGGTAGAAAA TGATCTTTTT
CGAGCAACAC TCTCCTCCAA GGGAGCGACA CTGAAGTCAC TGGTGCTTAA AAAGCATCTG
GATGGCAATC GCCTCCCCTT TGATCTGGTC AGCAATGGAA AAAACGGAGC CCTTTCGCTG
CTTTTTCTGA CACGTGAGGG TAAGAAAATC GATACCCGCG ACCTCTATTT CAGTAATGTC
ACACTCGACA CTCTTCGCAC CATCAAAGGC AAAGAGAGTT ATGCGGTTCG TTACCACCTT
GATGTTGCGC CACAGCAGGC TATCGATATT ATCTTCGGCT TTACCGGAGA CAGTTATAAG
GTAGATTACG ATGTCAAGCT GACAGGCTTT GCCAGCGAGC TTGCAGGAAA CGAATATCAG
GTGCAGTGGG ACGGGGGGGT GCCCTTTTCA GAAAAAAATC GTCCGGATGA AGCCCAGAGT
GCATTGGCCA GCGCCTATCT TGGCGGGAGC CTTGTAAAAC TTGATGCAAG CAAGGAAAAA
CAGTCCTATC GCGAAGAGCA GTCAGGCGAA GCGCAGTGGG TTGCTGTCCG TAACAAATAT
TTTGTTGCCG CGCTGATTCC TCATGGAAAA TCAGCAGGGA TTTACCTTGA TGGCAAAAGA
GAGACGGGTA ATGATTTTGA GAGTTACCTT GCAGCCTTGA AAATTGCGGT TCCCTCAACG
GCTGGTGTTG TTGATGACAA ATTCAGTCTC TACCTCGGGC CGCTTGATTA CAACATTGTC
AAGGCACAGA AAGTCGGTCT TGAAAAGATC ATGGACTTCG GATGGGACTG GCTGACCAGA
CCCTTTGCCG AGTTTATCAT TCTGCCTGTT TTCAGTTGGA TGAATGGCTT TGTGAGTAAC
TATGGTCTGA TCATCATCAT TTTTGCCTTT CTGATCAAGC TGGTGACCTA TCCCCTTTCC
ATGGCTTCAA CGAAGTCCAT GAAAAAAATG TCGGCCCTGC AGCCAGCGCT CAAGGAGCTT
CAGGAGAAGT ACAAGGATAA TCCAGCAAAA CTGCAAAGTG AGCTTGGAAG GATTTACAAA
GAGGCTGGTG TAAACCCTAT AGGAGGCTGT CTTCCTGTCG TGCTGCAGAT GCCGCTTCTT
TTTGCCATGT TTTATGTTTT CCGTTCATCG ATCGAGCTCC GTCAGCACAG CTTTCTCTGG
GCAAAGGATC TTTCCGTGCC GGATTCCATT TTTGATTTTG GCTTTGCCAT CCCCATGTAC
GGGAGTCATA TCGCGGTATT CCCCATTCTT ATGGCGGTGA CCGTGTATTT GCAGCAGAAG
ATCACACCGA CGACACAGAG CAATGAGCAG ATGAAGGTGA TGATGTACAT GTTCCCTGCC
ATGATGTTGC TCTTTTTCAA CAATATGCCA GCCGGTCTTG GTCTGTACTA TCTGATGTTC
AACATTTTCA GCGTTGCGCA GCAGTTTTAT ATCAACAAGA CGACGACCGC AGCCGACATG
CCGCAGGTGA ACCTTGGCCT GGCTCCTGCC GGTGCGCAGA GGAAACAGAA AAAAGGGGGA
GCTAAAAAGT AG
|
|---|
| Protein sequence | MDRNSVTGLA IIAVIMIVWL QFMSPEKKPL LPSKTVKTET VVQSDVQVPA VSIPAADNFG
VFASSSGGQE KLLKVENDLF RATLSSKGAT LKSLVLKKHL DGNRLPFDLV SNGKNGALSL
LFLTREGKKI DTRDLYFSNV TLDTLRTIKG KESYAVRYHL DVAPQQAIDI IFGFTGDSYK
VDYDVKLTGF ASELAGNEYQ VQWDGGVPFS EKNRPDEAQS ALASAYLGGS LVKLDASKEK
QSYREEQSGE AQWVAVRNKY FVAALIPHGK SAGIYLDGKR ETGNDFESYL AALKIAVPST
AGVVDDKFSL YLGPLDYNIV KAQKVGLEKI MDFGWDWLTR PFAEFIILPV FSWMNGFVSN
YGLIIIIFAF LIKLVTYPLS MASTKSMKKM SALQPALKEL QEKYKDNPAK LQSELGRIYK
EAGVNPIGGC LPVVLQMPLL FAMFYVFRSS IELRQHSFLW AKDLSVPDSI FDFGFAIPMY
GSHIAVFPIL MAVTVYLQQK ITPTTQSNEQ MKVMMYMFPA MMLLFFNNMP AGLGLYYLMF
NIFSVAQQFY INKTTTAADM PQVNLGLAPA GAQRKQKKGG AKK
|
|---|
| |