Gene Ppha_2461 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_2461 
SymbolmnmA 
ID6462430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp2549170 
End bp2550255 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content56% 
IMG OID642728640 
ProducttRNA-specific 2-thiouridylase MnmA 
Protein accessionYP_002019262 
Protein GI194337468 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGTAC AGAAAAAAGT GGTTGTCGGG ATCTCGGGTG GGGTTGATTC TGCCGTTTCG 
GCATGTCTGC TGGTCGAGCA GGGCTATGCG GTGACGGGGT TGAACATTCG GGTGCTTGAC
GCGCCTGATG AGAGCCCTTC GCTGAGGCCT TCGCCGCTGG TGATCAGTGA CCATCCTGAT
TTTCAGATTC CGGTGTTGAG CCTGAACCTG AGCCGGAAGT TCCGCGATGA GGTTATTGGT
TATTTTCATG AGGATTATCT TGGCGGGAGG ACGCCCAACC CCTGCATGGT CTGCAACAAG
AAGATCAAGT GGTTTGGCCT CTTTGAGGGG CTGCGGCTGC TTGATGCTGA TTTTGTTGCG
ACGGGCCATT TTGCGGCCAC CTCTTTCAGT GAGGGAAGAT ATCGCCTCTA TAAAGGGGCA
GATCCGGAAA AGGATCAGAG TTATTTTCTC TGGATGCTTT CGCAGGGTGA CCTGGCCAGA
ACCCTTTTTC CGCTTGGAGA GTTGACCAAA CCGGAGGTGC GTGCGCTGGC CCGCTCTTTT
GGGGTTAGGG CGGCTGAAAA GAGGGAGAGT CAGGAGATCT GTTTTGTGCC GCAGGATGAT
TATTGCGGCT ACCTTGCCAG CGCTATCCCC GGCCTGGCCG AACGGGTGGC GGATGGCGAT
ATTGTGGATG AGTCGGGCCG GGTTATTGGT AAGCACCGGG GATATCCCTT CTATACTATT
GGCCAGCGCC GGGGGCTTGG TGTTTCGGCC AAAGAGCCGC TCTATGTGAC GGCGCTCGAC
ACGGAGCAGA ACCGGATTGA GGTTGGAAAA AAGTCTTCGC TGGAGTGCAG CTCGCTTGTT
GCGTCCGGGA TAAACTTGAT CGGTATGGAG AGGCCCAACA TCCCGATTGA GGCTTATGGA
AAAATCCGTT ATCGTGACCG GGAGACTCCC TGCACGCTTG AGCCGTTCGG TGAAAACTCG
GCAACGGTTT CGTTCAGCAC ACCAAAAAGC GCCGTGGCGA AGGGGCAGGC GGCAGTTTTT
TACCGCGATC GTGAAGTGCT CGGCGGCGGC TTTATTACGC AGGTCATGCA GGAATCACAT
CAGTAA
 
Protein sequence
MSVQKKVVVG ISGGVDSAVS ACLLVEQGYA VTGLNIRVLD APDESPSLRP SPLVISDHPD 
FQIPVLSLNL SRKFRDEVIG YFHEDYLGGR TPNPCMVCNK KIKWFGLFEG LRLLDADFVA
TGHFAATSFS EGRYRLYKGA DPEKDQSYFL WMLSQGDLAR TLFPLGELTK PEVRALARSF
GVRAAEKRES QEICFVPQDD YCGYLASAIP GLAERVADGD IVDESGRVIG KHRGYPFYTI
GQRRGLGVSA KEPLYVTALD TEQNRIEVGK KSSLECSSLV ASGINLIGME RPNIPIEAYG
KIRYRDRETP CTLEPFGENS ATVSFSTPKS AVAKGQAAVF YRDREVLGGG FITQVMQESH
Q