| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2421 |
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| Symbol | |
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| ID | 6461101 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 2503111 |
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| End bp | 2503710 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642728604 |
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| Product | Tetratricopeptide TPR_2 repeat protein |
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| Protein accession | YP_002019226 |
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| Protein GI | 194337432 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACATG CACAAACACA TTCAAAAGCA GGCATATCAT GCCTTTTTGT GATCATTCTC
CTGGCAGGAA TGACCATACT CACTTCATGC AACCGCACCC AGAACGAGAT CGACAACCTG
CAGCAGCAGG TCTGGAAAAA CCCGGATAAT GCCACCGACT ATCTGCGTCT CGGCAACGCC
TATGCACGCT CCAAACGCTA CAGCGAAGCC ACCGATACCT ACAAGAGGGC GCTTGCCATC
AATCCCGGAC TTGACGAAGC CCTGCACGCA CTTGGCGCCG TAGCCTTCAA CCAGAAAAAA
TATGCTGACG CTCTGGGATA TTTTCAGAAG CACCTCGATC GCTCACCAAA AGACTCGCTG
AGACTCTACG ATCTCGGCAA CGTCACCATG CAATTGGGAC AGTTCGAAAA GGCAGCTACC
CTTTACAGTC AAGCCATAGA GAACAGTGAT GCATTTACCG ATGCCCACTA CAACCTTGCC
GTCTGCTATC TGCGCACAGG ACGCAGAGCC GAAGCCGAGG CGATTTATGA ATGGCTTCTT
GTGAAAAACA ACTATCTTGC CCTCTCTCTG CAGAAACATC TCAAAAAAGA GGCCCGGTGA
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| Protein sequence | MKHAQTHSKA GISCLFVIIL LAGMTILTSC NRTQNEIDNL QQQVWKNPDN ATDYLRLGNA
YARSKRYSEA TDTYKRALAI NPGLDEALHA LGAVAFNQKK YADALGYFQK HLDRSPKDSL
RLYDLGNVTM QLGQFEKAAT LYSQAIENSD AFTDAHYNLA VCYLRTGRRA EAEAIYEWLL
VKNNYLALSL QKHLKKEAR
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