| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2222 |
|---|
| Symbol | |
|---|
| ID | 6460857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2306378 |
|---|
| End bp | 2308357 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642728412 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_002019036 |
|---|
| Protein GI | 194337242 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTATCG TTAGCAAAAG TACAATGAAC CCGAAGCCCG AAAACACCAT GCCAGATTCC
CTCCCGGTCA CCATTTCCCA GCAGATGACT CTTCTTTCTG CAATCCGTTC GACTGACGAT
CTTAAAAAGT TAACCATCGC TGAGCTCCAG ACGCTGGCAG ATGAGTGCCG TAAAGAGGTC
ATCAAAATTG TCTCCCTCAA TGGCGGCCAT TTTGCATCAA GCCTTGGCGT TGTTGAGCTG
ACCGTGGCGC TGCATCATGT CTACAGCACT CCGCACGATA AAATCATCTG GGATGTCGGA
CACCAGGCTT ACGTGCATAA AATCCTGACA GAAAGAAGAG AGCGGATGCA GACCAACCGG
CAATTCGGAG GGTTGGCAGG TTTTCCAAAA AGATCGGAAA GTGCTCACGA TGCCTTCGGA
GTCGGTCACG CCTCAACCTC GATTTCCGCT GCCGCAGGAA TCGCTGTGGC GAGTGATCTC
GCGGGCGGCG ATGAAAAGGT TATCGCGGTC ATAGGAGACG GCAGCATGAC CGGCGGCATG
GCCTTCGAAG CGATGAACCA TCTCGGAGAC CTGAAAAGTG ATGTGCTTGT CATTCTCAAC
GACAATCAGA TGGCCATTTC CTCCAATACC GGTGCATTAA GGCACCATCT TGTCAACATA
AGCCTGAACA AAACCTACAA CAGAGCTCGA AAATTGGTCT GGAAATCACT TTCGCTCCTC
AACAACGGAC TGGGAGACAA GGCAAAAAAG GCCGTTCGTA AAATTGAGGA CGGAGTCAAG
GCTGCATTGA CGCCCGGTGC ATTTTTTGAG GCCCTTGGAT TGAGATATTT TGGCCCGATT
GATGGCCACA ACATGGAACA ACTCGTCAAG GCGCTCAAAG AGATGCAGAC GCTTCCCAAC
CCCAAGCTGC TGCATGTGAT CACGACAAAA GGTAAAGGGT TCAAGCCGGC AGAGGAAAAC
CAGAGCAAGT GGCACGCACA CAATGGCGGG TTCGATACGA CAACCGGCAA ATTGCTCAAA
ACCGCTGATA CTTCGCTTCC CCCGAAATAT CAGGAGGTAT TTGGCGAGGC ACTGGTTGAG
CTGGCCCTGA AAGACTCCAC AATAACTGCT ATTACTGCCG CCATGCCAAG CGGAACATCG
CTCGACCTCT TCCAGAACGC CATCCCGAAT CGTTTTTATG ATGTCGGCAT CGCCGAAGCA
CACGCGGTCA CCTTTGCTGC GGGACTTGCC ACACAAGGGT TCAAACCCGT CTTTGCCGTT
TACTCAACCT TTCTGCAGCG TGCCTATGAC CAGTTGATTC ATGATGTGGC GCTTCAGAAC
CTGCACGTCG TTTTTGCCAT TGACCGTGCA GGACTTGTCG GCGAAGATGG CCCGACCCAT
CACGGGGCAT TCGATCTCTC CTGGCTTCAT GCCGTACCGG GTCTTGTCAT TATGGCTCCT
GCGGATGAGC AAGAGCTGCG CGACATGCTC TATACCGCCC TCTATGAGGT GAAAGGCCCG
GTTGCCATCC GTTATCCGAG AGGCAATGGA ACGGGCATAA CCCTCCACAA AAAATTCACC
TCTTTGCCCA TCGGCAAGGC CGTTATGGCG AGGGAGGGAA GCGGACTTGC ACTGCTCTGC
ATGGGAACCA TGACGGGAAA AGCCCTTGAA GTGGCCACCA TACTGGAAAA AGAGGAGATC
AATGCCACCG TCGTCAACAT GCGCTTCCTC AAACCGCTCG ACACCGAAGT GATCGAGGAA
CTGGCCTCCC GATCAACCCA TTTTGTTGTT CTCGAGGAAA ACAGCGCTAT CGGTGGACTC
GGCAGCGCCG TTATCGACCA CATCAATAGC AAAGGGCTCA ACCGCCCGGT ACTGAAAATC
GCCCTTCCCG ATGCATTCGT AACGCATGGC AACATGAACG CCCTCTACAA GGAGATCGGC
TTCGACACCC CAACCATGAC GGAAAAAATC AGGCAGTTTT ATAAAGAGGG CCAGAAATGA
|
|---|
| Protein sequence | MVIVSKSTMN PKPENTMPDS LPVTISQQMT LLSAIRSTDD LKKLTIAELQ TLADECRKEV
IKIVSLNGGH FASSLGVVEL TVALHHVYST PHDKIIWDVG HQAYVHKILT ERRERMQTNR
QFGGLAGFPK RSESAHDAFG VGHASTSISA AAGIAVASDL AGGDEKVIAV IGDGSMTGGM
AFEAMNHLGD LKSDVLVILN DNQMAISSNT GALRHHLVNI SLNKTYNRAR KLVWKSLSLL
NNGLGDKAKK AVRKIEDGVK AALTPGAFFE ALGLRYFGPI DGHNMEQLVK ALKEMQTLPN
PKLLHVITTK GKGFKPAEEN QSKWHAHNGG FDTTTGKLLK TADTSLPPKY QEVFGEALVE
LALKDSTITA ITAAMPSGTS LDLFQNAIPN RFYDVGIAEA HAVTFAAGLA TQGFKPVFAV
YSTFLQRAYD QLIHDVALQN LHVVFAIDRA GLVGEDGPTH HGAFDLSWLH AVPGLVIMAP
ADEQELRDML YTALYEVKGP VAIRYPRGNG TGITLHKKFT SLPIGKAVMA REGSGLALLC
MGTMTGKALE VATILEKEEI NATVVNMRFL KPLDTEVIEE LASRSTHFVV LEENSAIGGL
GSAVIDHINS KGLNRPVLKI ALPDAFVTHG NMNALYKEIG FDTPTMTEKI RQFYKEGQK
|
|---|
| |