| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2219 |
|---|
| Symbol | |
|---|
| ID | 6460893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2301941 |
|---|
| End bp | 2304160 |
|---|
| Gene Length | 2220 bp |
|---|
| Protein Length | 739 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642728409 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_002019033 |
|---|
| Protein GI | 194337239 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACGGATT TTTTAAACGA TCTCAATGAA GTGCAGCGCA ATGCCGTAAT CGCTACGACC
GGGCCAGTAA TGGTACTGGC GGGAGCTGGT TCCGGCAAGA CAAGGGTGAT TACCTACCGT
ATTGCATATC TTATCAGAAA CGAGGGAGTC TCTCCCCAAA ATATACTTGC ACTCACCTTT
ACCAACAAGG CTGCAGGTGA GATGCGTCAC CGTGTTGACA CCTTGTTGCA TCAAGGCAGT
TCCCGTGGCC TGTGGATTGG TACCTTCCAC TCTATTTTTG CGCGTATTCT CCGCAACTCC
ATTGATTTGA TTGGTTATGA CAAAAACTTT TCAATTTTCG ACAGTGAGGA CAGCAAAAGC
CTGATCAGGC AGTCGATGGC TGAACTCAAT ATTTCTGTTG AGTCGGTCCC CGTCAATACG
GTTCAGGGAC TTATCAGCCG GGCAAAAAAC AGTTTTATTC TTCCTTCAGA GTTTCATCGC
AATGCCAGCG ACTACAATCA GCAAAAGGCG TCGCAGATCT ATGAATTGTA TGCCAGAAAG
CTGAAGGAGA ACAATGCCCT CGATTTTGAT GACCTGCTTA TCAAGCCGCT TGAGCTCTTC
AATGCGCACC CCGAGGTGCT CCAGGAGTTG CAGGAGACTT TCCGCTATAT CATGATTGAC
GAGTATCAGG ATACCAATCG GGCACAATAT CTTGTCGCAA AAATGCTTGG GGCAAAACAT
CGCAACATCT TTGTAGTTGG TGATGATGCA CAATCGATCT ATTCCTGGCG GGGCGCAGAT
ATTTCCAATA TCCTGAACTT TCAGGACGAT TACCATGATG CGTTGACCTT CAAGCTCGTT
GAGAATTATC GCAGTACGGG AAATATCCTC AAGGCAGCAA ACAACGTGAT CAGTTGTAAC
CTGCGGCAGA TCAAAAAAGA GCTGATTTCA CACCGTAATG AGGGTGAACC CCTGACGCTT
ATTGAGGCCT ATAATGAGCG GAATGAGGCT GAAAGGGTGG GGGAGCAGAT TCGCAATCTG
CGTCTGAAGC AAGGCTTCGA ATTTCGGAGC TTTGCGGTTT TTTACCGTAC CAATGCCCAG
TCGAGGGTGC TTGAAGATGT CATGCGTCAG CACAAGATTC CTTACAAGAT TTTCGGCAGC
GTCTCCTTTT ACAAACGCAA AGAGATCAAG GATGCGGTCG CCTACCTGCG TTTTATTCTT
AATGACCGTG ATGGCGAATC GCTGTTAAGG ATTATCAATT TCCCGCCCCG AAAAATCGGT
GATGTCAGTA TCGCCAAACT CAGGGAATTT GCCGAAGATC GTCAAATAAG CCTCTATGAA
GCTATTCTGC ACTCAGGTGA GGGTGGTTTT CAGCCGCGAC TTGTCAATGC TCTCAGCTCA
TTCAGCGCTG TTATTGAAAC GCTCAGAAAA GTGGCGGTAG ATGGCACGGT GTACGAAGTT
TTGACAGAAC TCTTTACGCT GACCTCCATT CCTCTTCTTT TGCAGACAGA AAATACTCCT
GAATCGCTGG TGCGTTATGA AAACCTTCAG GAGCTGCTCT CCATGGCAAG GGATTTTTCT
GATCACAATC CGGATACAGG CTCTCTTGGT GATTTTCTGG AGAATATCTC GCTTGCTTCT
GATTATGATG AAACACAGGA ATCGGATAAT TACGTCTCTT TGATGACGGT ACATGCCGCC
AAAGGCCTGG AGTTTCCTGT TGTCTTTATT ACAGGTCTTG AGGAGAGGCT TTTTCCCCTG
CACTGCTATG AGCCTGAAGA GCTTGAAGAG GAGCGAAGGC TTTTTTATGT TGCAATGACG
AGGGCGCAGG AGAAGATATT TCTCTCCTGG GCGCAGAGCC GTTATCAGTA CGGGCAGCAG
CACCATTGCC TCAGATCGAT GTTTATTGGT GAGATCGATG CCTCGATTGT GCAGACAGAG
AGTGGTAATT TTCTTTCTGA TCGTCAGGCA AAGGAAAAAG TGGCTTCCGG TTTTTCATCT
CCTTCAAGAG GGTATCAGTC AAAAACGGCA ACCTCCTCCT CTGCTGTTGC GGGGGTATTG
CCAAAGTCTT CACAGCCCGC TTTTCGTGAG GGAACGATGG TGCATCATGC TGTTTTTGGT
CCAGGAGTTG TGCTTGATGT GCAGGGTAGC GGCGCAAAGC AGAAAGTCCG GATAACGTTT
CGCAATGCAG GGGAGAAGAC GCTGATGGTT CAGTATGCCA ATCTCAGGAT TCAGCAGTAA
|
|---|
| Protein sequence | MTDFLNDLNE VQRNAVIATT GPVMVLAGAG SGKTRVITYR IAYLIRNEGV SPQNILALTF
TNKAAGEMRH RVDTLLHQGS SRGLWIGTFH SIFARILRNS IDLIGYDKNF SIFDSEDSKS
LIRQSMAELN ISVESVPVNT VQGLISRAKN SFILPSEFHR NASDYNQQKA SQIYELYARK
LKENNALDFD DLLIKPLELF NAHPEVLQEL QETFRYIMID EYQDTNRAQY LVAKMLGAKH
RNIFVVGDDA QSIYSWRGAD ISNILNFQDD YHDALTFKLV ENYRSTGNIL KAANNVISCN
LRQIKKELIS HRNEGEPLTL IEAYNERNEA ERVGEQIRNL RLKQGFEFRS FAVFYRTNAQ
SRVLEDVMRQ HKIPYKIFGS VSFYKRKEIK DAVAYLRFIL NDRDGESLLR IINFPPRKIG
DVSIAKLREF AEDRQISLYE AILHSGEGGF QPRLVNALSS FSAVIETLRK VAVDGTVYEV
LTELFTLTSI PLLLQTENTP ESLVRYENLQ ELLSMARDFS DHNPDTGSLG DFLENISLAS
DYDETQESDN YVSLMTVHAA KGLEFPVVFI TGLEERLFPL HCYEPEELEE ERRLFYVAMT
RAQEKIFLSW AQSRYQYGQQ HHCLRSMFIG EIDASIVQTE SGNFLSDRQA KEKVASGFSS
PSRGYQSKTA TSSSAVAGVL PKSSQPAFRE GTMVHHAVFG PGVVLDVQGS GAKQKVRITF
RNAGEKTLMV QYANLRIQQ
|
|---|
| |