| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1920 |
|---|
| Symbol | |
|---|
| ID | 6463196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2012242 |
|---|
| End bp | 2013873 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642728129 |
|---|
| Product | transcriptional regulator, NifA subfamily, Fis Family |
|---|
| Protein accession | YP_002018759 |
|---|
| Protein GI | 194336965 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0127788 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCATCG CACAGGAACA GGATCATAGC ATCATCAGCC TGCTTGCTGA AGTCAGCAGG
ACCATAACCC ATGAAAATGA TATCAATAAG GTATTGCGGC TTGTTCTTTT CATCATGTCT
GAAAACATGA ACATGCTCAG GGGCATGATC ACCATTCTTA ACCGCGACAG CGGTGAAATT
GTCATTAACG AATCATTTGG GCTTACGGAA AAAGAGAAGG AGAGAGGACG TTACCAGATC
GGCGAAGGAG TTATCGGCCA TGTCGTTAAA ACCGGCAAAG CGGTCATTGT TCCCTCTATT
GACAACGAAC CGCTCTTTCT CGACCGAACC CGATCTCGAA GCAAGGTAAA AAAAGAGAGT
CTCTGTTTTA TCTGCATTCC CATCAAGGCG GGCACGGAAA TCATCGGTAC CCTGAGTGCA
GACCGTCAAC TGGAACCCGG AGCGGCAGAC AAGCCCTCAA AAACAGGCAA AGGGGGAGAA
CAGCGCACCG ATATGCTTCA GCACTATGTC GACCAGCTCT CCATTATCGC ATCCATGATT
TCACAAGCTG TTCGTATAAA ACAACTTGCA CATGAAGAGA GCGAAAAAAA ATCTCTGCAA
ACAACCATCC TGGAAAAACC TTCAAGACAG CTCTATCAAG AAGAAAAGGG AGATGATGAG
AAAATTTCAG AGGCCGAACG CCCGGCAAAT ATTATCGGCA ACACAAAACC GATGATCTCG
CTCTACAAAA TGATCGACAA GATCGCAAAA ACCAACGCAA CCACCCTTGT GCTCGGAGAG
AGCGGCGTTG GAAAAGAGCT GGTGGCAGGT GCCATTCACT TTAAAAGCCA TCGAAACGAG
AACCCATTCA TCAAGTTCAA CTGTGCAGCA TTGCCTGAAA GCATTGTTGA AAGCGAACTC
TTCGGACATG AAAAAGGGGC TTTCACGGGA GCCTCGGCTA CCCGACAGGG GAGATTTGAA
CTTGCCCATA CCGGCACCAT CTTTCTTGAT GAAGTGGGCG AACTCAGTCT TGCAGTGCAG
GCAAAACTGC TCAGAATCAT ACAGGAAAAA GAGTTTGAGC GGGTAGGAGG ATCAAAAACC
ATCAAGGTTG ATGTACGGGT CATTGCCGCA ACAAACCGCA ATCTTGAAGA GTTGATACGA
GGCGGACTTT TCCGCGAAGA TCTCTATTAC CGGCTCAACA TTTTTCCCAT AACCGTTCCC
CCGCTGCGCG AACGCAAAAC CGACATCTTG CTGCTGGCCG ACTATTTTGT CGAAAAATTC
AATGCCGCTA ACCATAAAGG AATCAGGCGA ATTTCGACAA CATCGATCGA CATGCTGATG
CGCTATCACT GGCCAGGTAA CGTCAGGGAA CTGCAGAACT GTATGGAACG GGCGGTCATC
CTGAGCGAAG ATAACGTCAT TCACGGCTAT CATCTGCCGC CGACACTCCA GACTGCCGAA
TCGAGCGGAA CGCCCTATAC CGGATCGCTG CAGCAGAAAC TTGATGCAAT AGAAAAAGAG
ATGATCATGG AGGCACTCAA ACGCACACAG GGAAACATGT CTCGTGCGGC CGTGCAACTT
GGCCTTTCAG ACCGAATCAT GGGGCTTCGC ATAAAAAAAT TCGATATCGA CTACCGCAAA
TTTCGTCCCT GA
|
|---|
| Protein sequence | MLIAQEQDHS IISLLAEVSR TITHENDINK VLRLVLFIMS ENMNMLRGMI TILNRDSGEI
VINESFGLTE KEKERGRYQI GEGVIGHVVK TGKAVIVPSI DNEPLFLDRT RSRSKVKKES
LCFICIPIKA GTEIIGTLSA DRQLEPGAAD KPSKTGKGGE QRTDMLQHYV DQLSIIASMI
SQAVRIKQLA HEESEKKSLQ TTILEKPSRQ LYQEEKGDDE KISEAERPAN IIGNTKPMIS
LYKMIDKIAK TNATTLVLGE SGVGKELVAG AIHFKSHRNE NPFIKFNCAA LPESIVESEL
FGHEKGAFTG ASATRQGRFE LAHTGTIFLD EVGELSLAVQ AKLLRIIQEK EFERVGGSKT
IKVDVRVIAA TNRNLEELIR GGLFREDLYY RLNIFPITVP PLRERKTDIL LLADYFVEKF
NAANHKGIRR ISTTSIDMLM RYHWPGNVRE LQNCMERAVI LSEDNVIHGY HLPPTLQTAE
SSGTPYTGSL QQKLDAIEKE MIMEALKRTQ GNMSRAAVQL GLSDRIMGLR IKKFDIDYRK
FRP
|
|---|
| |