| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1810 |
|---|
| Symbol | |
|---|
| ID | 6463448 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1914481 |
|---|
| End bp | 1916628 |
|---|
| Gene Length | 2148 bp |
|---|
| Protein Length | 715 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 642728025 |
|---|
| Product | AAA family ATPase, CDC48 subfamily |
|---|
| Protein accession | YP_002018659 |
|---|
| Protein GI | 194336865 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0464] ATPases of the AAA+ class |
|---|
| TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family
[TIGR01243] AAA family ATPase, CDC48 subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATA CTGAGTTGGT CTTAAAAGTC AAAGAGGCAA TTGTTAAGGA TGTAGGGCGT
GCAATTGCGA GAATTGATCC GAATGATATG GTTCATGCTG GTTTGGAATC GGGTGATATT
GTCCTTATTG AGGGAAAACG CTCCACTCCA GTTAAAATAC TTCCTTCTTA CCCTAATGAT
CGAGATAAGG GAATCATACA GATTGATGGA ATCACTCGAG AAAATGCCAT TGTTGGAATA
GACGAAAAAG TTCTAATACA TAAAACAACA ATACGCAAGG CAACAAAAAT AAAACTCAAG
CCGGTAACAA AATCAAGCTC TTTGATTAAG GCTGATGATG CGAAATATAT TGGTTCTCTT
ATAAATGGTT TACCGGTTTC TAATGGTGAT AAAATTAAGG CGACATTATT TGGTTCCGGA
TCGATATATT ATACGATTTC ATCGACCGTA CCTGATGGAG TTGTTTTGAT ACATCCTGAT
ACATCAATAC AACTTGAATC TTCAAAACAA AATGAAGTAA AATCAAACAA GATTACATAC
GAAGATATAG GTGGACTTGG TAATCAAGTT CAGCGAATAC GTGAAATGAT TGAATTACCC
CTAAAATATC CTGAAATATT TGAAAGGTTA GGAGTCGAAC CACCAAAAGG TGTTTTTTTG
TATGGACCTC CAGGTACAGG AAAGACGCTT ATTGTGAGAG CCGTCGCACA AGAGACCGAT
GCTTATTTTA TAAATATATC CGGCCCTGAA ATTATGGGCA AGTATTACGG CGAAAGCGAA
GCAAGAGTAC GTAATATATT TGCTGAGGCC CAGTCTCATG CGCCGTCTAT AATATTTATT
GATGAAATAG ATGCAATCGC TCCAAAACGG GAGGATATGG GTGGCGAAAA GCAGGTTGAG
AAAAGGGTTG TAGCTCAGCT TTTATCCTTG ATGGACGGTT TGGAGTCAAG GGGCAAAGTT
ATTGTGATTG GAGCAACAAA TATTCCAAAT TCTATTGATC CCGCGCTTAG AAGGCCAGGA
CGTTTCGATC GTGAGATATC AATTTCTATT CCTGATAAAA AGGGACGACT TGAAATACTT
CATATCCACA CAAGGGGTAT TCCCTTGTCA GAAGATGTGG ATATGTCAAA GATTGCTGAT
ATTACCCATG GTTTTGTTGG AGCTGATCTT GAAGCTCTTG CTCGCGAAGC GGCTATGACA
GCGTTAAGGA AAATTCTTCC AAGGATTAAC TTTGAATTAT CAGAAATACC ATACGAGCTA
TTAATGCAGT TAGAAGTTAC GATGGATAAT TTTCTTGATG CGATGAAAGA GGTCGAACCT
TCTGCTATCC GTGAAGTATT TGTTGAGGTT CCTGATGTCA AGTGGGAAGA TGTTGGGGGG
CTTGATGAGA TTAAGCAGGC ATTGAAAGAG ACCGTAGAGT GGCCTCTAAA ATATGCTGAA
CTATTTAAAA AAACAGATAC CAATCCTCCA AAGGGTATAA TATTATATGG TAAGCCTGGC
ACAGGAAAAA CATACCTTGC TAAAGCGCTT GCCAGTGAGA GTGGAGTAAA CTTTATTTCT
GTAAAAGGTC CTCAAATACT TAACCGTTTT ATTGGAGAAT CTGAAAAAGG GGTAAGAGAA
CTTTTCAGGC TTGCGAAACA ATCAGCGCCC ACAATTCTCT TTCTTGATGA AATAGATAGT
CTTGCTCCAC GAAGAAGGAA TGATGGCGTA GAATCAGGAG TTATTGACAG AGTAATCAGT
CAATTTCTCA CAGAAATGGA TGGTATTGAG GAGTTAAAAG GGGTCACTGT GCTTGCTGCA
ACAAATAGAA TTGATCGTAT TGATCCCGCT TTATTACGAT CAGGAAGATT TGATCTCATG
TTTGAAGTTC CATTACCGGA TTTATCAACA AGAGAGATGA TTTTTAAAAT ACATACTAAA
AATATGCCTC TAAAAGAGAG TGTTAGTCTA AATGCACTTG CCGAAAAAAC CGATAATATG
ACTGGCGCAG ATATACAGTT TATATGTCAA AAGGCTAAAA TGGTTGCTAT TCGTGAACTG
ATTGATAAAA AAGTCGATTC AGAAACTATA GAAATAATTA TAACAGAAGA GCATTTTGAA
CATGCGATAC AAGTAGTCAG CAATCAGGCA ACAAATAGAC AAAATTAA
|
|---|
| Protein sequence | MSNTELVLKV KEAIVKDVGR AIARIDPNDM VHAGLESGDI VLIEGKRSTP VKILPSYPND
RDKGIIQIDG ITRENAIVGI DEKVLIHKTT IRKATKIKLK PVTKSSSLIK ADDAKYIGSL
INGLPVSNGD KIKATLFGSG SIYYTISSTV PDGVVLIHPD TSIQLESSKQ NEVKSNKITY
EDIGGLGNQV QRIREMIELP LKYPEIFERL GVEPPKGVFL YGPPGTGKTL IVRAVAQETD
AYFINISGPE IMGKYYGESE ARVRNIFAEA QSHAPSIIFI DEIDAIAPKR EDMGGEKQVE
KRVVAQLLSL MDGLESRGKV IVIGATNIPN SIDPALRRPG RFDREISISI PDKKGRLEIL
HIHTRGIPLS EDVDMSKIAD ITHGFVGADL EALAREAAMT ALRKILPRIN FELSEIPYEL
LMQLEVTMDN FLDAMKEVEP SAIREVFVEV PDVKWEDVGG LDEIKQALKE TVEWPLKYAE
LFKKTDTNPP KGIILYGKPG TGKTYLAKAL ASESGVNFIS VKGPQILNRF IGESEKGVRE
LFRLAKQSAP TILFLDEIDS LAPRRRNDGV ESGVIDRVIS QFLTEMDGIE ELKGVTVLAA
TNRIDRIDPA LLRSGRFDLM FEVPLPDLST REMIFKIHTK NMPLKESVSL NALAEKTDNM
TGADIQFICQ KAKMVAIREL IDKKVDSETI EIIITEEHFE HAIQVVSNQA TNRQN
|
|---|
| |