| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1648 |
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| Symbol | |
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| ID | 6463174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1738491 |
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| End bp | 1739744 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642727864 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_002018502 |
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| Protein GI | 194336708 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00420158 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGCTTGACA GTAATTTTTT TCGCTATACC GGTACGACGC TCTGCTGTGA TGACGTCAAA
CTTGAAGAGC TTGCCGCCAA TTTTGGAACT CCTCTTTTTG TGACCTCGAG GAGAAGCGTC
ATCGAAAGTT ATAAGGCTTT CGAGTGCGCT TTTGAGGCGC TGCCCCATTT TACCTGCTAT
TCAGTCAAGG CCAACTATAA TCTCAGTGTG ATTCGTACGC TTGCTGAACT TGGCTGTGGG
TGTGATGTTA ATTCCGCCGG AGAACTCTAT CGGGCATTGC AGTCTGGTGT TTCTCCTGAT
AAAATCATTT TTGCCGGGGT TGGCAAGAGA GAGGATGAGA TTGTTTATGC CCTGCAGAGC
GGGGTACTTA TGCTGAAAGC TGAATCGCTC TCGGAACTGC GGGCTATTGA CCGGATTGCA
GGAGAGCTTG GTTTAACAGC TTCTGTTGCA ATACGGATCA ATCCGAATGT GACGGCTGAG
ACCCACCCCT ATATTACCAC TGGCGACAGC AAGGAGAAGT TTGGTATTGA TGAGGCTGAG
CTCTCGACGG TATTTTCGCT GCTTTCCCGC TTGCCGAATA TCAAGCTTGT GGGGCTTGAT
ATGCATATCG GGTCGCAGAT TTTTGATCCG GAATATTATG TGGCGGCTAC GGTGAAGCTG
CTGGCGATTT TCAAGGCATC CAGAGAGCTT GGTTTTGCCA TCGAATTTCT TGATATCGGC
GGTGGTTTTC CGGTAACCTA CGACCCCCTG AAACCGGCAA CCCCGATTGA ACATTTTGCT
GAAAAGCTGG TTCCGATGCT GTTGCCTCTT GATGTGAAGG TGATTTTTGA ACCGGGACGC
TATCTGGTTG CCAATGCTTC GGTTTTGTTG ACCAGAATTC TCTATAAAAA GAGTAATCAT
ACCGGCAAGC AGTTTTTTGT GGTCGATGCG GGGATGACTG AACTGATTCG TCCGGCGCTC
TATCAGTCGC ATCATGAAGT TCAGTCGGTA ACGTTTCATG AGGAAGAGGT TATTGCCGAT
GTTGTTGGCC CGATTTGTGA GTCGAGTGAT TTTTTTGCCC GTCATCGGGC GATTGGAGCG
GCAGAAGAGG GTGAGTTGCT TGCGGTGATG TCTGCAGGCG CTTATGCTGC CGTTATGAGC
AGCAATTATA ATGGCCGGCT TCGCCCTGCA GAGGTTCTGG TGAACGGGAG TGAAGTCAAG
CTGGTGCGTA AACGTGAAAC GCTGGAACAG CTTGTGCAGA ATGAGCTGAC CTGA
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| Protein sequence | MLDSNFFRYT GTTLCCDDVK LEELAANFGT PLFVTSRRSV IESYKAFECA FEALPHFTCY
SVKANYNLSV IRTLAELGCG CDVNSAGELY RALQSGVSPD KIIFAGVGKR EDEIVYALQS
GVLMLKAESL SELRAIDRIA GELGLTASVA IRINPNVTAE THPYITTGDS KEKFGIDEAE
LSTVFSLLSR LPNIKLVGLD MHIGSQIFDP EYYVAATVKL LAIFKASREL GFAIEFLDIG
GGFPVTYDPL KPATPIEHFA EKLVPMLLPL DVKVIFEPGR YLVANASVLL TRILYKKSNH
TGKQFFVVDA GMTELIRPAL YQSHHEVQSV TFHEEEVIAD VVGPICESSD FFARHRAIGA
AEEGELLAVM SAGAYAAVMS SNYNGRLRPA EVLVNGSEVK LVRKRETLEQ LVQNELT
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