| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1522 |
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| Symbol | |
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| ID | 6463459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1604260 |
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| End bp | 1605945 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642727748 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002018388 |
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| Protein GI | 194336594 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00867161 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCGTT TAACAACCAC TGCCCAAATA AAACTGCCGC TTGTGAAAAT CAGCTTTTCG
TATACGTTGC TTAAGGTGTT GCTTTCAGCA CTTCTTTTCC AGTTGCCGGT TTTTCCGGTT
CGTGCTGCAG AATCTCAAAC CAATAGCAAA GAGCAGTTTG CCAGGTCGAC TGTTGCCGAG
ATTCTTGACA GTTTGGTGAA TGCGACCTAT TTCAAGGATG AACATTTTTC TGTTCCTGCC
CGGGAGGGTG ACAAGTTCGG ATTTCCAGCA ACATTTGTAC CCCAGTTCAG TGATTCGGTA
TATGTGGCAA GGATGGCCGC ACTTAGACGT AAAACGCCGA TAAATCTCGT ATTTAATGAG
CATGTTCGCG GATTTATACG ACTTTATGCT GTTGACAGGA GAAGCTCAAC GGCTAAAATT
CTGGGATTGA GCAAACTCTA TTTTCCTCTT TTTGAAGAGA AATTGGATGC CTGCAATGTG
CCTCTTGAGA TGAAGTATCT CGCTATTGTG GAATCTGCCC TGAATCCGAC GGCGGTCTCT
TCTGCCGGGG CAAAAGGGTT ATGGCAGTTT ATGTACGGAA CCGGAAAAAT GTACGGATTG
CAGTCATCTT CCTTTATTGA GGATCGTTAT GACCCTTACA AGGCTTCAGT TGCTGCAAGC
AGGCATTTAA GGGATCTCTA CAATATCTAT GGAGACTGGT TCCTTGCCCT TGCTGCTTAT
AATTCCGGTC CGGGAAATGT CAACAAGGCT ATCAGGAGGG CTGGAGGAAT AAAGGATTAT
TGGGCAATAT GGGATTACCT TCCGGCAGAG ACCAGGGGCT ACGTTCCAGC GTTCATTGCT
GTGAACTATA TTATGAGTTA CTACAATGAG CACAATATTC GTCCGGTTGA ACCGGGATTT
TTGTATCAGG ATATTGATAC GCTGAAAACG ACACGTCTTT TGTCGTTTGA ACAGATCAGT
GAGACCATAG GTGTGCCGAT GGGTGATCTC CGATTCCTTA ATCCGCAATA TAAACTGGGT
ATTATTCCTG CAGCGGCATC TGTTTCTCCC AATGTCATCA GACTTCCAAG GAGATATGTT
GCTCAGTTCC AGAAGCGTGA AGAGGAGATC TATGCTTACA AGTCTGCAGC AACGCTGGAG
CGTGAGAATC TTTATGCCCG GCTTGAAAGT CTCAATGCTG AGCCTCGCAG CCGCACTGTT
GAGTCGGGAG CTGCAGACAA TGCCCAGAAA GTACATATCG TGCAATCAGG AGAAAGTCTG
GGCTCTATTG CACGGTTGTA TCGTGCCTAC ATCAGTCAGC TCATAGCGTG GAATAACCTT
AAGGATGCCG ATGTTACTCC GGGTCAGAAG CTTATCGTTT TTGGCGCACC GGATAACAGC
ACTTCTGCAC AGGTGGATAA GCCAAAAGGC AATGATGGTG GAGGTAAAAA AATAATACGT
TACAGGGTGC GGAGAGGCGA TACGCTTCTC TCTATTTCAA GGAAGTATCA TACTACCGTT
CAGCATTTGA TGGCGCTGAA CAATCTGGGT GGCAGGATGA AAGTTCTTCC TGGTCAGCGT
CTCAAGGTTG AGGGTGAGAC CTTCACCACA AAGAAGCACT CATCATCCCG GAAGGTTTCG
GCTGCAAAGA ATCGAAAAGC GAAAAAAGCA AGACATACTC GTCATTCCCG GAAGCGCAGG
CGTTGA
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| Protein sequence | MDRLTTTAQI KLPLVKISFS YTLLKVLLSA LLFQLPVFPV RAAESQTNSK EQFARSTVAE
ILDSLVNATY FKDEHFSVPA REGDKFGFPA TFVPQFSDSV YVARMAALRR KTPINLVFNE
HVRGFIRLYA VDRRSSTAKI LGLSKLYFPL FEEKLDACNV PLEMKYLAIV ESALNPTAVS
SAGAKGLWQF MYGTGKMYGL QSSSFIEDRY DPYKASVAAS RHLRDLYNIY GDWFLALAAY
NSGPGNVNKA IRRAGGIKDY WAIWDYLPAE TRGYVPAFIA VNYIMSYYNE HNIRPVEPGF
LYQDIDTLKT TRLLSFEQIS ETIGVPMGDL RFLNPQYKLG IIPAAASVSP NVIRLPRRYV
AQFQKREEEI YAYKSAATLE RENLYARLES LNAEPRSRTV ESGAADNAQK VHIVQSGESL
GSIARLYRAY ISQLIAWNNL KDADVTPGQK LIVFGAPDNS TSAQVDKPKG NDGGGKKIIR
YRVRRGDTLL SISRKYHTTV QHLMALNNLG GRMKVLPGQR LKVEGETFTT KKHSSSRKVS
AAKNRKAKKA RHTRHSRKRR R
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