| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1520 |
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| Symbol | |
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| ID | 6463465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 1601127 |
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| End bp | 1602707 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642727746 |
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| Product | D-3-phosphoglycerate dehydrogenase |
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| Protein accession | YP_002018386 |
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| Protein GI | 194336592 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | [TIGR00719] L-serine dehydratase, iron-sulfur-dependent, beta subunit
[TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0002199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGTAC TGATCACTGA CGGTATTGAC CCTCAATGCG GTCAGATACT CACTCAAAAC
GGTTTTACGG TAACCGAAAA GCCAAAAATC AGCAAGGATG AACTCAAGGA GATCATCGGG
AACTTTGACA AGTTGATCGT CAGGAGCGCA ACGAAAGTTA CCGCAGAAAT TATCGAGTGC
GGCACAAAGC TGAAACTTAT CGGAAGAGCC GGAGCCGGAG TGGATAACAT CGACCTTGAG
GCTGCCACCC GCAATGGCAT TATCGTAATG AACACCCCTG GAGGAAACAC AGTTTCCGCT
GCTGAACACA CCTGCGCCAT GATGCTCTCC GCTGCACGTC GTATCCCCCA GGCAACAGCA
GATCTGAAGC AGGGAAACTG GAGTAAGACA AAATTTTCCG GCGTCGAACT TGAGGGTAAA
ACCCTTTCTG TGATCGGTCT TGGAAAAATC GGGCGTGAAG TAGCATCCCG TATGCAGGCA
TTCGGAATGA AAACAATTGC CTATGACCCC ATGATCCCTG ACGAATATGC TGCAAAACTC
AACATTGAGC TCCTTCCCCT GCATGAAAAT TTCATGCGTG CCGATTTTAT CACTATCCAC
TCATCCCTTA ACGAATCAAC CCGTAATCTG ATTTCAAAAG AGACGCTTGA CTTGATGAAG
GATGGAGTAA TCATCGTCAA CTGCGCCCGA GGTGGAATTA TTAATGAAGC CGATCTTGCG
GAAGCCATTC TTTCCGGAAA AGTCTCTGCT GCGGCACTTG ATGTTTTTGA AACTGAACCC
GTCAGCCCTG ATAATCCACT TCTCAAACTC GATCAGGTTA TTGCTACCCC GCATATTGCC
GCATCCACCA GCGAAGCTCA GGAAAAGGTT GCCATTCAAA TCGCCGATCA GATTGTCGAG
TGGAAGCAAA CAGGAAAACT CAAAGGCGCC GTTAATGCCT CCGCTGTCGA ACTTGCACAG
GCCCCGGGGG TACGCTCATA TCTTACACTG GCGGAAAAAC TCGGAGCTAC ACTGGCACAA
ATGGCTCCCG ATCAAGCCAA CAAAATGACC GTCAGAACCT CTGGTGAGTT CCTTCACACC
TTCAATGAAG TCATTACAGC GGCAGCCCTT AAAGGCTTTC TTGATGTCAG GCAGTCGAAA
GACACCAATT ACATTAATGC ATTCACCATG GCAAAAGAGT GCGGCATAAG CCTGGAGCAG
AAATTTGAAA AAGAGAATCC GGACTATACC AACCTGATCC GCATTGAACT TGAGAACGGA
ACAACAAAAC GCATGATCGG CGGCACCATC TTTGGTGAGA AGGAGATCAG GATTGTCATG
ATCGACCAGT TTCTTGTGGA ATTCAAACCG GAAGGCAACA TCATTATTTA CAACAATACC
GACAAACCAG GCGTCATTGC CAATGTCACC CAGTTACTGT TGCAGCATAA TCTGAATGTC
GCCTATGTGG CCCTTTCAAG GGATGAGGAG AAAAATATGG CAATGACCGC AATTGTAGTT
GATGGTGAAG TTACACCGGT GTTACTCGAT GAAGTGAGGA ACGTTAATGG TGTTGATGTC
GCCAACCTTG TTTCGCTCTG A
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| Protein sequence | MNVLITDGID PQCGQILTQN GFTVTEKPKI SKDELKEIIG NFDKLIVRSA TKVTAEIIEC
GTKLKLIGRA GAGVDNIDLE AATRNGIIVM NTPGGNTVSA AEHTCAMMLS AARRIPQATA
DLKQGNWSKT KFSGVELEGK TLSVIGLGKI GREVASRMQA FGMKTIAYDP MIPDEYAAKL
NIELLPLHEN FMRADFITIH SSLNESTRNL ISKETLDLMK DGVIIVNCAR GGIINEADLA
EAILSGKVSA AALDVFETEP VSPDNPLLKL DQVIATPHIA ASTSEAQEKV AIQIADQIVE
WKQTGKLKGA VNASAVELAQ APGVRSYLTL AEKLGATLAQ MAPDQANKMT VRTSGEFLHT
FNEVITAAAL KGFLDVRQSK DTNYINAFTM AKECGISLEQ KFEKENPDYT NLIRIELENG
TTKRMIGGTI FGEKEIRIVM IDQFLVEFKP EGNIIIYNNT DKPGVIANVT QLLLQHNLNV
AYVALSRDEE KNMAMTAIVV DGEVTPVLLD EVRNVNGVDV ANLVSL
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