| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1281 |
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| Symbol | |
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| ID | 6463704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 1340421 |
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| End bp | 1341584 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642727522 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002018163 |
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| Protein GI | 194336369 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000959286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTATTTT CGAAAACACA GCGCATTGCA GGGATCTCGG TTGCCGTGGC AGCGCTCATT
CTTTTTTTTG TTTTCCGCCC CTCTCCGCTT CCTGTAGATT CGGGTGTGGT CAGTCGTGGC
CCCTTGCAGG TAACGCTTGA AGGGGAGGGA GTTACCCGCG TGAATGACCG TTTTGTTCTT
GCCGCACCGG TCAGCGGAAA GCTGGTGAGG GTGGAGCTTG AAGAGGGCGA CCATGTCCGG
AAGGGGAGCG TGGTGGCCTC ACTGCTTCCT GCCCAGCTCG ACAGCCGTGA GTATCGTGAA
GCCTCTTCAC GGGCGGGGTC AGCCCGGGCA GCTCTTGACG AGGCGATTGC CCGGCAACGC
AGGGCTGATC TCACCCTTGT GCAGGCTGAA CGCCGTTTCG GTCGTTACCG TAATCTCTAT
GGTGAGGGGG CCGTTTCAAA AGAGAGTTAT GAACTTGCAG AGAATGAGGC TCAAACATTG
CGAAAAGAGC GTGATGCGGC CCGCTCAGGG GTTGAGGCTG CCCGTTATAA CCTTGGAGCG
CTTCAGGCCC TTGTTGATCG CCAGGTAGCG GGGCAGCCGG TGAAGGTACT CTCCCCGGTT
GATGGTCGGG TGCTCCGTAT CCATGAGCAA AGTGAACGGG TCGTGAGTGC CGGGTCACCA
CTGGTTGATA TTGGTGATCC TTCGGCGATT GAGATTGTGA TTGATCTGCT CTCTTCCGAC
GCCATCAGGG TAAAGCCGGG AAACCGGGTG GTGATTATGG ACTGGGGCGG TGAAAGGGAG
CTGCAGGGAG TGGTGAAAAC GGTTGATCCG GCGGCATTTA CCAAAACATC GGCACTCGGG
ATTGAAGAGA AACGGGTGAA CATTGTGGCG CTTCTCAGCC GCAACGAACC GCTGCTTGGC
GATAATTTTC GTGTCCAGGC AAGCATTGTG CTCCGTGAAG CGAGTGCTGT GCTTCAGGTG
CCGGTAAGCA GCCTCTTCAG GGGAAAAGAG GGCTGGCATC TCTTTGTTCT TGAGGATGGC
AGGGCGGTTG ATAAAGCCGT GAGGATCGGT ATGAGGGGCA CCTTGCAGGC GCAGGTGCTC
GCAGGGGTCA GGGAGGGGCA GAAGGTGGTG GTGCATCCTA CCAACGAACT CAGGGATGGC
ATGTCGGTGA AGGCGCAGGA GTGA
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| Protein sequence | MVFSKTQRIA GISVAVAALI LFFVFRPSPL PVDSGVVSRG PLQVTLEGEG VTRVNDRFVL
AAPVSGKLVR VELEEGDHVR KGSVVASLLP AQLDSREYRE ASSRAGSARA ALDEAIARQR
RADLTLVQAE RRFGRYRNLY GEGAVSKESY ELAENEAQTL RKERDAARSG VEAARYNLGA
LQALVDRQVA GQPVKVLSPV DGRVLRIHEQ SERVVSAGSP LVDIGDPSAI EIVIDLLSSD
AIRVKPGNRV VIMDWGGERE LQGVVKTVDP AAFTKTSALG IEEKRVNIVA LLSRNEPLLG
DNFRVQASIV LREASAVLQV PVSSLFRGKE GWHLFVLEDG RAVDKAVRIG MRGTLQAQVL
AGVREGQKVV VHPTNELRDG MSVKAQE
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