Gene Ppha_0953 details

Gene Information

• Locus tag: Ppha_0953
• ID: 6460861
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelodictyon phaeoclathratiforme BU-1
• Kingdom: Bacteria
• Replicon accession: NC_011060
• Strand: +
• Start bp: 992098
• End bp: 993924
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 642727207
• Product: GTP-binding protein TypA
• Protein accession: YP_002017857
• Protein GI: 194336063
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTCGA CAAAAAATAT AAGAAATATT GCCATTATCG CTCACGTTGA TCATGGAAAA 
ACAACACTGG TTGATTCGAT TTTTCAGAAG ACAGGCGCTT TCAGGGATAA TCAGCAGGTA 
AACGTCCGGG TACTTGATTC AAATCCTCAG GAGAGAGAGA GAGGAATTAC CATATTTTCA 
AAAAACGCTG CGGCAGTATA CAAAGATCAC AAGATCAATA TTGTTGATAC ACCAGGTCAT 
GCTGACTTTG GTGGCGAGGT TGAACGTATT TTACAGATGG TTGACGGCGT ACTGCTTCTT 
GTTGACGCAT TCGAAGGCCC GATGCCGCAG ACCAAGTTTG TTCTGCGCAA AGCCCTTGAA 
CTGCATCTGA AGCCAATTGT GGTCATCAAC AAGATTGATC GGCCCCAGTC GGATCCAGTC 
AAGGTGCACG ATCAGGTTCT TGATCTCTTC ATCGCTCTCG GAGCAGAAGA GCATCAGCTT 
GATTTCCCCT ATATCTTTAC ATCGGCCAAA CATGGTGTTG CCAAATACAG CATGGATGAC 
GAAGATGGTG ATATGAGCCT TCTGCTCGAT ATGATCATCA AAGAGATTCC AGCTCCTGTC 
GCCCATGATG ATGGCGGATT CCAGATGCTG GTAACAACCC TTGACTACAG CGATTACATT 
GGCAAGATAG CCATTGGCCG TATTCATCGC GGAAAGGTAA GCCCGGGAAG TCAGCTTGCC 
GTGGTTGGTC CTGACGGGGT GATGGGCAGG GGAACCGTAA CAAAGGTTTT TCAGTTCGAC 
AAGGTTCAGA AGGTTGAAGC AAAAGAGGCT ACCTCCGGTG ACATCATTGC CATCGCCGGT 
ATTCCTGATG CTACTGTCGG CATGACCCTT GCTTCCATTG AGGATCCCGT ATCGCTGGCT 
TCATTCGATA TCAGCAAACC GACACTCTCC ATGCTTTTTT CGGTCAACGA CTCTCCCTTT 
GCAGGACTTG AGGGCAAGGA GGTCACCAGC CGGAAGATCC GTGAGCGCCT CATGAAAGAG 
AAGATGACCA ACGTCGCTCT CAACGTCGAG GAGACAGAGA GCCCCGATAC CTTCCGTGTT 
TCAGGAAGGG GAGAGCTTCA CCTTTCCGTG CTGATCGAGA CCATGCGGCG CGAAGGCTAT 
GAAGTTGCCA TTGCAAGACC CGAGGTTATC ATGCACCGTG ATGAGGATGG TACCCTGCTT 
GAGCCTATCG AGCATGTGAC CATCGACATT CCTGAAGAGT ACACTGGCGT TATCATTGAA 
AAAATGGGTC GCAGAAAGGC TGAGATGACC TTTATGGGCA CGCTTCGCGG CGGAATGGTC 
CGTGTTGAAT TTGAAATTCC TACCAGAGGG CTGATCGGTT ACAACCTTGA GTTTACCACC 
GACACCAAAG GCGAGGGCAT CATGTCACAC GTCTTCCTCG ACTACCAGCC ATTCAAAGGC 
AAATTGCCTT CACGCGAGAC CGGTGCACTG GTCGTTTCTG AAGCAGGTAT CTGCGTTGCC 
TATGCTCTCA GCGCCCTTGA AGATCGCGGC ACCTTCTTTG TTTCACCAAA CACCAAGGTT 
TATGCAGGCA TGATTGTCGG CGAATCGACA AGAGGTCTCG ATATTACCCT CAACGTCTGC 
AAAACAAAAA AGCTGAGCAA CATGCGCTCT TCCGGCACCG ATGAGTCACT TCGTCTCACC 
CCTCCAAAAA TCCTTTCGCT GGAACAGGCG CTGGAATTTA TCAACGACGA TGAGCTTCTG 
GAAGTAACAC CCCAGAGCAT CAGACTCAGA AAGAAGATTC TGGATGTGAA CCTTCGCGCA 
AAAGCGACCA AAAAGGCCAA CGCCTGA 

 

Protein sequence

MSSTKNIRNI AIIAHVDHGK TTLVDSIFQK TGAFRDNQQV NVRVLDSNPQ ERERGITIFS 
KNAAAVYKDH KINIVDTPGH ADFGGEVERI LQMVDGVLLL VDAFEGPMPQ TKFVLRKALE 
LHLKPIVVIN KIDRPQSDPV KVHDQVLDLF IALGAEEHQL DFPYIFTSAK HGVAKYSMDD 
EDGDMSLLLD MIIKEIPAPV AHDDGGFQML VTTLDYSDYI GKIAIGRIHR GKVSPGSQLA 
VVGPDGVMGR GTVTKVFQFD KVQKVEAKEA TSGDIIAIAG IPDATVGMTL ASIEDPVSLA 
SFDISKPTLS MLFSVNDSPF AGLEGKEVTS RKIRERLMKE KMTNVALNVE ETESPDTFRV 
SGRGELHLSV LIETMRREGY EVAIARPEVI MHRDEDGTLL EPIEHVTIDI PEEYTGVIIE 
KMGRRKAEMT FMGTLRGGMV RVEFEIPTRG LIGYNLEFTT DTKGEGIMSH VFLDYQPFKG 
KLPSRETGAL VVSEAGICVA YALSALEDRG TFFVSPNTKV YAGMIVGEST RGLDITLNVC 
KTKKLSNMRS SGTDESLRLT PPKILSLEQA LEFINDDELL EVTPQSIRLR KKILDVNLRA 
KATKKANA