| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0876 |
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| Symbol | |
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| ID | 6461078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 913841 |
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| End bp | 917266 |
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| Gene Length | 3426 bp |
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| Protein Length | 1141 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642727131 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_002017781 |
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| Protein GI | 194335987 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0369071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAT CCCGTTTGTT CACCAGCCCC GGTGAAAATG TTTATGACTG TTTCGAATAC
ACCTTTCGCA CCTCTGTTTT GAGGAATCCT GATGGTTCGA AGGTCTTTGA AATGAACAAT
ATTGAGGTGC CGAAGCAGTG GTCGCAGGTT GCTGCCGATA TTCTTGCCCA GAAATATTTC
CGCAAAACAG GCATACCCCT TTTTGATGAA AAGGGCGCTG CTGTGACCGA CAGCGCAGGC
AATCCGGTAA CGGGCAGTGA GCATTCGATA CGCCAGGTTG TGCATCGTAT GGCGGGTTGC
TGGAGGGATT GGGGAGAGAA GAACCGCTAT TTTGATACCC CTGATGATGC TGCCGCCTTT
TATGATGAGG TGGCGTTCAT GATGCTCCGG CAGATGGCTG CTCCCAACTC GCCGCAGTGG
TTCAATACGG GGCTCAATTT CGCCTATGGC ACGACCGGTC CGGCGCAGGG CCATTTCTAT
GTTGATCCGG AGAGTGGTGA AGTGAAGGAG TCGGAAGATG CCTACGGGCG TCCCCAGGCT
CACGCCTGTT TTATCCAGTC GGTCAGTGAT GATCTGGTCA ATGATGGAGG CATTTTTGAT
CTGGCAATTC GTGAGGCGAG GGTTTTCAAG TTTGGCAGTG GTTCGGGTAC CAACTACTCC
AATCTTCGTT CCGGGGGGGA GAAGCTGAGC GGGGGAGGAA GTTCGTCGGG GTTGATGAGT
TTTCTGAAAA TTTTTGATTC TGCGGCGGGC GCCATCAAGT CGGGCGGTAC AACACGTCGT
GCAGCCAAGA TGGTGATTGT GGATATCGAC CATCCTGATG TGGAGAAATT TATTGAGTGG
AAGGCGAAGG AGGAGGATAA GGTGGCTTCG CTTGTGGCCG GTTCCCGAAT CTGCTCCCGT
TTTCTCCAGG CGATTGTTGA GGAGGCTCTT GCCAATGGCG CTGACCGCAA GGCAAACCCT
CAACTGCACC GCCTGATACA GAATGCGCTC AGCAGGGCCG TGCCGATGAG TTACATCGTT
CGTGTGCTTG CCCTTGTTGA GCAGGGATAT ACAACGCTTG ATTTTGAAGA GTATACCTCC
AACTACGAGT CGGAGGCCTA TCAGACCGTT GGCGGGCAGA ACTCCAACAA TACGGTCCGC
ATGACCAATG AGTTCATGAA GGCGGTGGAA AATGATGATG TCTGGAGCCT GCGTGAGCGG
ACAACCGGCA AGACGGCACG GGTGGTCAAG GCGCGTGACC TGTGGGAGAA AATTCTTCTC
AGTTCATGGA AGTGTGCCGA TCCCGGTTTG CAGTTCGATA CCACCATTAA CGAATGGCAT
ACCTGCCCGA AGAGTGGACG CATCAATGCG AGCAATCCCT GTTCGGAATA CATGTTCCTT
GACGATACAG CCTGCAATCT GGCCAGTCTT AACCTGATTC ATTTTATTGA TGAGGCTTCA
GGCAGGATGA AGGTGAAGGA GCTGCAGCAC GCTTCGGCTC TTTGGGCCGT CGTGCTTGAA
ATTTCTGTTC TGATGGCCCA CTTTCCTTCC AGGGAGATTG CCCGCCTGAG TTACGAGTTC
AGAACTCTTG GTCTCGGTTT TGCAAATCTT GGTACGGTGC TGATGGTGCT CGGTATTCCC
TACGATTCGC CCAGGGCGCT GGCCCTGGCG GGAGCAATTT CTGCCGTGAT GACCGGTCAG
GCCTATGTGA CCTCGGCGGA GATGGCCCAT GATCTTGGCG CTTTCAGCGG CTATGAGGCC
AACCGTGAGG AGATGCTGCG TGTTATTCGC AACCATCGCC GGGCGGCAAG GAATATGTCG
GAAGAGGAGT ATGAGGGGTT GTCGGTCAAG CCGCGCGGGA TTGATTCGGA GTACTGCCCC
GGTGAGCTTT TCGAAGCGGC AGGAAAGGTA TGGGATTTGG CGCTGGAGAA GGGCATGCAG
TATGGTTTCC GTAATGCGCA GGTGAGTGTT ATTGCTCCGA CCGGTACGAT TGGTCTGGTG
ATGGATTGTG ATACCACCGG TATCGAGCCG GAGTTTGCCA TTGTCAAGTT CAAGAAACTG
GCGGGTGGCG GCTATTTCAA GATCGTCAAC CAGTCGGTAC ACAAAGCCCT TGAGCGTCTC
GGCTATACCC CGGCGCAGAT TGATGATATC GAGCACTACT GCAAGGGGCA TGGCACGCTC
TCCGGTTCGC CTTCACTGAA TCGGCAGTGG CTGAAAAGCC GTGGGTTCCC GGATGACAAG
ATTGAAATTG TTGAGTCGCA GCTTGAAGCG GTCTTTGATA TCCGTTTTGC CTTCAACAAG
TGGATTCTTG GCGAGGATTT TTGTGCCGCG CTCGGCTTTA CCGAAGAGCA GCTCAACAAT
CCTGATTTTG ACATGCTGCT GGCGCTTGGC GCTACCGAGC AGGATGCCGA GCTGGCCAAT
GATTATATCT GTGGAACCAT GACCATCGAG GGCGCTCCCC ATCTGAAGCT GGAACATCTG
CCGGTCTTTG ATTGTGCAAG CCGCTGTGGT CGCAAAGGGC TCCGCTATAT CAAACACATG
GCTCATGTGC GCATGATGTC TGCCGTACAG CCCTTCATTT CAGGCGCTAT CTCCAAAACG
GTCAACATGC CGGGTACGGC GACGACCGTT GAAATCGGTG AGGTCTTTCA GGCTGCCTGG
TTGCAGATGG TCAAGGCGAT TACCATCTAC CGTGATGGCT CGAAGCTCTC CCAGCCGCTC
AATATTTCAA GCTATCAGGA TCTTGATGAG ATCATCATGC TTGGAACAGA AGAGAGCCTT
GATGAAACCA AAGGGCCTCG GGAGGTTCAG GAGCGTATTG TTGAGCGGGT CTACCACCGC
TCCGAGCGCA GGATGCTGCC AAAGCGGAGG AAGGGGTATA TCCGTGAAGC CTATGTAGGC
GGCCACAAGG TTTTTCTCCG GACAGGGGAG TATGATGATG GCTCTCTCGG CGAGGTCTTT
ATCGACATGT ACAAGGAGGG CGCCTCATTC AAGGGTCTTT TGAACTGTTT TGCTGTGCTC
GCTTCCAAAG CGCTGCAATA TGGTATGCCG CTCGAAGAGC TGGTTGACAG CTTCACCTTT
ACCCGTTTTG AACCTGCAGG CGCGGTTCAG GGGCACAATG CTATCAAGAA TTCCACCTCA
ATCCTCGATT ATGTCTTCCG CTCAATCGGC TACGACTATC TTGGCCGCAA GGATTTCGTC
CATGTCAAGG CGGTTGATGA AGTGCTCGAA AGCAATGGGG AGAATGGTCA TGCGCAGGTT
GCTGTGCCAT CATTGGCCGT GCACGCCCAG CCGGAACATT CCGCCACACG TAACAGCCAG
GTCTATCAGG CAAAAGTGCA GGGCTATACC GGCGAGCAGT GTGAAAACTG CGGCTCCATG
CGCGTCAAGC AGAACGGAAC CTGCAAGGTC TGCGACGATT GTGGCATGAC CACCGGCTGC
TCGTAA
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| Protein sequence | MKISRLFTSP GENVYDCFEY TFRTSVLRNP DGSKVFEMNN IEVPKQWSQV AADILAQKYF
RKTGIPLFDE KGAAVTDSAG NPVTGSEHSI RQVVHRMAGC WRDWGEKNRY FDTPDDAAAF
YDEVAFMMLR QMAAPNSPQW FNTGLNFAYG TTGPAQGHFY VDPESGEVKE SEDAYGRPQA
HACFIQSVSD DLVNDGGIFD LAIREARVFK FGSGSGTNYS NLRSGGEKLS GGGSSSGLMS
FLKIFDSAAG AIKSGGTTRR AAKMVIVDID HPDVEKFIEW KAKEEDKVAS LVAGSRICSR
FLQAIVEEAL ANGADRKANP QLHRLIQNAL SRAVPMSYIV RVLALVEQGY TTLDFEEYTS
NYESEAYQTV GGQNSNNTVR MTNEFMKAVE NDDVWSLRER TTGKTARVVK ARDLWEKILL
SSWKCADPGL QFDTTINEWH TCPKSGRINA SNPCSEYMFL DDTACNLASL NLIHFIDEAS
GRMKVKELQH ASALWAVVLE ISVLMAHFPS REIARLSYEF RTLGLGFANL GTVLMVLGIP
YDSPRALALA GAISAVMTGQ AYVTSAEMAH DLGAFSGYEA NREEMLRVIR NHRRAARNMS
EEEYEGLSVK PRGIDSEYCP GELFEAAGKV WDLALEKGMQ YGFRNAQVSV IAPTGTIGLV
MDCDTTGIEP EFAIVKFKKL AGGGYFKIVN QSVHKALERL GYTPAQIDDI EHYCKGHGTL
SGSPSLNRQW LKSRGFPDDK IEIVESQLEA VFDIRFAFNK WILGEDFCAA LGFTEEQLNN
PDFDMLLALG ATEQDAELAN DYICGTMTIE GAPHLKLEHL PVFDCASRCG RKGLRYIKHM
AHVRMMSAVQ PFISGAISKT VNMPGTATTV EIGEVFQAAW LQMVKAITIY RDGSKLSQPL
NISSYQDLDE IIMLGTEESL DETKGPREVQ ERIVERVYHR SERRMLPKRR KGYIREAYVG
GHKVFLRTGE YDDGSLGEVF IDMYKEGASF KGLLNCFAVL ASKALQYGMP LEELVDSFTF
TRFEPAGAVQ GHNAIKNSTS ILDYVFRSIG YDYLGRKDFV HVKAVDEVLE SNGENGHAQV
AVPSLAVHAQ PEHSATRNSQ VYQAKVQGYT GEQCENCGSM RVKQNGTCKV CDDCGMTTGC
S
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