Gene Ppha_0822 details

Gene Information

• Locus tag: Ppha_0822
• ID: 6461216
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelodictyon phaeoclathratiforme BU-1
• Kingdom: Bacteria
• Replicon accession: NC_011060
• Strand: -
• Start bp: 857526
• End bp: 859265
• Gene Length: 1740 bp
• Protein Length: 579 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 642727074
• Product: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD
• Protein accession: YP_002017728
• Protein GI: 194335934
• COG category: [C] Energy production and conversion; [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components
• TIGRFAM ID: [TIGR02857] thiol reductant ABC exporter, CydD subunit

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00702953
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATATTG ACCGGCGCCT TTTTCAGTTG CTTAAAGAAG AACGGACGCC GTTTATCTTT 
TCGATTATAT CGGGAGTCTT GGCTGCGGGG ATGCTGATTG CCCAGGCCTA CTACCTCAGC 
CTGGTTATCG ACAGCGCCTT TATCCAGAGG AGCGGCATGG AGAGGCTTTT CCTGCCGCTC 
AGCCTTTTTG CGCTTTTCAG CACTCTGCGC ATGGCTTTCA ACTGGTTCTC CCATACTGAA 
GCAAACCGTG GTACACTCAT TATCCGAGAG AAGATGTTCA ACCGGCTCAC CAATACAGTC 
GGTGCTCTCG GGCCGGTCTA TGCCAAGTCG GTACAAAGCG GACGGCTCAG CACAACACTT 
TTGAAGGGTG TTGAAGCGCT TGACGCCTAT TACAGCCAGT ATATTCCGCA GCTCTTTTTT 
GCCCTCTTCA CGCCACTCCT GATTGCGGGC ACCATCCTGC CCGGCGACCC TATCTCCGGC 
ACCATTTTGC TCCTGACTGC GCCCCTTATC CCAGTCTTTA TGATTCTGAT CGGGAAATCG 
GCCAGCGCCA TGACGGAAAA GCAGTGGAAA ACCATGAGCC GCATGAGCGG TTTCTTCCTT 
GATGTGCTGC AGGGGCTGCC GACCCTGAAA CTCTTTGCGC AGAGCAAGCG GCAACACGAT 
GCCATCGAAG AGTCGGGCGA AAGCTTCCGC CACGCTACCA TGCGCGTGCT GAAAGTAGCC 
TTTCTCTCCT CCCTGACGCT TGAACTGGTG GGCACCATCG GCATGGCCAT CATTGCCGTC 
GGCGTCGGGC TCCGCCTTAT GGGTGGAAAG CTCACCTTTC AGCACGCCCT CTTTGTGCTG 
ATACTGACGC CTGACTTCTA TCTCCCGCTG CGCCAACTCG GCACAAAATT TCATGCCGGG 
ATGGAGGGCG TCAGCGCCTC AAAGGAGATC TTTGCCATTC TCGACCAGAG CACCCCTGCA 
CCCGTGCAGC AGGCTGCATT TGCCGTACAT GAGAGCGCCG GAAAAAGGCC CATTGTGTTC 
GCCAGTATCA GCTACACCTA CCCCGGCAGC TCGCGACCGG CGCTTGAGGG AATCAACGCC 
ACCATTCCCG CAGGAAAAAC CACCGCCATC ATCGGCCCGA GCGGTGCAGG AAAAAGCACC 
CTGATCAATC TGCTGCTCCG ATTCCAGGTG CCCAGTGAAG GAAGCATCAC CATTGACGGC 
AACCCGATTC ACGCTATCCC GCTTGAGGCA TGGCACCGCC AGATTTCATG GGTTCCGCAG 
CACCCCTACC TCTTCAACGC CACCTTGAGG GAGAATATTC TCCTTGCGCG ACCGGAAGCT 
TCAGCAGAAG AGATGGAGAG TGCCCTAAAA AAGACAGGTC TCACCACCTT TATCGGCTCG 
CTGCCCCAAG GACTTGAAAC CATGATTGGC GAAGAGGGGG CCCGGCTGAG CGGAGGAGAG 
GCACAACGGG TGGCGCTTGC CCGCGCCTTC CTGAAAAACG CCCCGCTGCT GGTGCTCGAC 
GAACCAACCT CGCACACCGA TCCTGAACTT GAAGCCGCCC TGCGCAGCTC CATCCAGGAG 
TTGATGAAAG GAAGAACCAC CATCATCATT GCCCACCGGC TTGAAACCAT ACGCTCCGCA 
GAACAAATTA TTGTAGTCAG CGAGGGGAAG ATCACCCAGT GCGGTACCCA TGAGGAGCTG 
ATCGCCAACG GAGGTTTCTA CCACGATTCC CTCCTTCTGC AACAGGATAG ACAATCATGA 

 

Protein sequence

MNIDRRLFQL LKEERTPFIF SIISGVLAAG MLIAQAYYLS LVIDSAFIQR SGMERLFLPL 
SLFALFSTLR MAFNWFSHTE ANRGTLIIRE KMFNRLTNTV GALGPVYAKS VQSGRLSTTL 
LKGVEALDAY YSQYIPQLFF ALFTPLLIAG TILPGDPISG TILLLTAPLI PVFMILIGKS 
ASAMTEKQWK TMSRMSGFFL DVLQGLPTLK LFAQSKRQHD AIEESGESFR HATMRVLKVA 
FLSSLTLELV GTIGMAIIAV GVGLRLMGGK LTFQHALFVL ILTPDFYLPL RQLGTKFHAG 
MEGVSASKEI FAILDQSTPA PVQQAAFAVH ESAGKRPIVF ASISYTYPGS SRPALEGINA 
TIPAGKTTAI IGPSGAGKST LINLLLRFQV PSEGSITIDG NPIHAIPLEA WHRQISWVPQ 
HPYLFNATLR ENILLARPEA SAEEMESALK KTGLTTFIGS LPQGLETMIG EEGARLSGGE 
AQRVALARAF LKNAPLLVLD EPTSHTDPEL EAALRSSIQE LMKGRTTIII AHRLETIRSA 
EQIIVVSEGK ITQCGTHEEL IANGGFYHDS LLLQQDRQS