Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0666 |
Symbol | |
ID | 6461580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 685791 |
End bp | 687977 |
Gene Length | 2187 bp |
Protein Length | 728 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642726927 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_002017582 |
Protein GI | 194335788 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTATTA ACAAAGAAAT TGATCTTGGA CAAGGCAAGA TTATCTCTAT CGAAACCGGT AAAATGGCAA AACAGGCCGA CGGAGCTGTT GTTGTTCGCC AGGGTGACAC GATGGTCATT GCAACGGTTG TCTCAAGCAA AAAAACACCA CCCCCCAATC AGGACTATTT TCCACTTCAG GTAGAATACC GCGAAAAGTA TTCTGCCGCA GGCAAATTTC CTGGTGGTTT TTTCAAACGT GAAAGCCGCC CTTCAGAGAA AGAGATTCTT TCAGCAAGAC TGATCGACCG TGCTCTCCGT CCGCTCTTTC CCGATGGCTA TCTCTATGAA ACACAGATTA TTGTTACCGT TATCTCTTCC GACCAGATCA ATGACGCTGA CGTCCTCGGT GGCCTGGCTG CATCGTGCGC CATCATGGTC TCCGATATTC CCTTCCAGAA TCCTATGTCT GAAGTTCGGG TAGGCAGAAT CAACGGTCTC TTTGTCGTCA ATCCTGACAT CAATGAACTG GTAAACAGCG ATCTTGATAT CTGCATCGGC GGTACGGAAA ACACCATCTG CATGCTTGAA GGGGAGATGA AAGAGATTTC CGAAGCAGAG ATGCTCGACG CCATCAAATT CGGACACGCA GCCATCCGCA AACTCTGTGC TCTGCAGAGC GAAATCGCAG CAGAAGTGGC AAAACCAATC CGTCCCTTTA CGCCAACAGT CATTCCGGCT GAGCTCACTG AAACGGTTCG GGTACTTTGC GAAACCCGCC TCAAGGAGCT CGCCTACACT CCGCTCAAAA AGGAAGAGCG CGCTGATCAG ACAGCCGCCA TCTACCATGA AATTATAGAG AGCACCATTG AGCACTTCAA AGCAACATGC AGCAGCGAAG AGTTCTCGAC CGATCCGGCC AAGGCGCTCT GCATTAACCC GCATATCATT GACGAACAGA TCCACATGGT CGAAAAACGG GTCATGCGCC ACATGATTCT TGACGACGCA AAACGTCTTG ACGGCAGAGC CCTCGACCAG GTACGACCAA TAAGCATTGA ACTGGGCATC ATCCCGAGAG CCCACGGTTC GGCACTCTTC ACCAGAGGAG AGACACAGGC TCTGGTAACA ATTACCCTCG GCACGAAAAA AGATGCCCAG TCCGTTGACA ACCTGACCAG CAGTGCCGAC AAAAAATTCT ATCTCCATTA TAATTTCCCT CCCTTCTGTG TCGGTGAAAC CGGAAGGCTC GGAAGTATCG GACGCAGGGA AATCGGACAT GGCAATCTGG CAGAACGCTC CATCAAAATG GTTGCTCCGA CAGAGGAAGA GTTCCCCTAC ACCATCCGTA TCGTTTCAGA CATCCTTGAA TCGAACGGCT CTTCATCAAT GGCATCGGTA TGCGGAGGAA CGCTGGCCCT GATGGATGGT GGTGTTCCGA TTAAAAAGCC GGTATCAGGC ATCGCCATGG GACTGATCAA GGAGGGAGCC TCATATGCAG TACTCTCTGA TATTCTCGGC AATGAGGATC ACCTTGGAGA TATGGATTTC AAGGTATCAG GCACCCGTGA TGGTATTACC GCCTGCCAGA TGGATATCAA AATCGACGGT CTTGACTACC ACATCCTTGA AACTGCCCTT GAGCAGGCAC GCAGGGGCCG TCTTCACATC CTCGGCGAAA TGGAGAAGGC TATCCCTTCA ACCCGTCAGG AACTTGCCAA CTTTGCACCA AAACTTACCA GCATCAAGGT GCCGGTTGAC TGCATCGGCA TGATTATCGG TAAAGGTGGA GAGACTATCC GCAGCATCAC TGAAGAGACC GGCGCAGAAA TCAATATTGA TGACGATGGA ACCATAACCA TTGCCTGCTC GACCAGTGAG GGAACAAATG CCGCACTGGC CACCATAAAA AATCTGACGG CCAAGCCGGA AGTGGGTAAT ATCTATATTG GAAAGGTGCG CGACATTCGT GATGAGCTCG GCGCTTTTGT GGAATTTCTT CCCAAAACCG ATGGACTGGT CCACATCTCT GAAATATCGA GTGAGAGGGT CACAAAGGTC AGCGATCACC TCAAAATCGG CGAAAAGGTG AGGGTCAAAC TGGTTGATGT CCGCAAGGAT TCCCGCACCG GAAAAACCCG TTTTGCCCTT TCCATAAAAG CGGCTGAACA GGATGCACCA AAAGAGAACG GCGCAGAGAA CAAGTAA
|
Protein sequence | MIINKEIDLG QGKIISIETG KMAKQADGAV VVRQGDTMVI ATVVSSKKTP PPNQDYFPLQ VEYREKYSAA GKFPGGFFKR ESRPSEKEIL SARLIDRALR PLFPDGYLYE TQIIVTVISS DQINDADVLG GLAASCAIMV SDIPFQNPMS EVRVGRINGL FVVNPDINEL VNSDLDICIG GTENTICMLE GEMKEISEAE MLDAIKFGHA AIRKLCALQS EIAAEVAKPI RPFTPTVIPA ELTETVRVLC ETRLKELAYT PLKKEERADQ TAAIYHEIIE STIEHFKATC SSEEFSTDPA KALCINPHII DEQIHMVEKR VMRHMILDDA KRLDGRALDQ VRPISIELGI IPRAHGSALF TRGETQALVT ITLGTKKDAQ SVDNLTSSAD KKFYLHYNFP PFCVGETGRL GSIGRREIGH GNLAERSIKM VAPTEEEFPY TIRIVSDILE SNGSSSMASV CGGTLALMDG GVPIKKPVSG IAMGLIKEGA SYAVLSDILG NEDHLGDMDF KVSGTRDGIT ACQMDIKIDG LDYHILETAL EQARRGRLHI LGEMEKAIPS TRQELANFAP KLTSIKVPVD CIGMIIGKGG ETIRSITEET GAEINIDDDG TITIACSTSE GTNAALATIK NLTAKPEVGN IYIGKVRDIR DELGAFVEFL PKTDGLVHIS EISSERVTKV SDHLKIGEKV RVKLVDVRKD SRTGKTRFAL SIKAAEQDAP KENGAENK
|
| |