| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0643 |
|---|
| Symbol | |
|---|
| ID | 6461640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 659918 |
|---|
| End bp | 660415 |
|---|
| Gene Length | 498 bp |
|---|
| Protein Length | 165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642726904 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002017559 |
|---|
| Protein GI | 194335765 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000647566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACATT TTTTTGGAAA ATTCGGTATC AGACTTTTTA CGGCTTTATT GCTGTGGGGT
CTGGGTGTTT TGGCTGTTTC CGAGGTGTCG TTTGCAGCAC CCAAGGTTGG GGATGAGTAT
GGTGGGGGGA AGGTTGTTTA TATCCTTCAG CCGGGTGATC CGGGTTATGT TGCGGGCGAA
GAGCATGGTA TGGTTGCGGC CAAGGAGGAT TTACCTCAGG AGTCGCTAAG CTGGGCTGAG
GCCAAGGCTG CGGCGGAGCG GCTTGAGTTG AGTGGTTATA AGGGCTGGAG TTTGCCGACA
CAGCAGGAGC TGAGCCTGTT ATATAAAAAT CAGGCGATTG TTGGTGGGTT CAGGGATTAT
AGCTACTACT GGAGCGGATC CGAGGTTGAC AATCAGAAAG CGTGGGCTCT GGATTTTTAT
AATGGAGAGA AGGTTCTTTC TGTAAAGTCA GGTGCTTTGA CTGGCATAAG GCGTATACGG
GCAATACGGA AGTTCTAA
|
|---|
| Protein sequence | MEHFFGKFGI RLFTALLLWG LGVLAVSEVS FAAPKVGDEY GGGKVVYILQ PGDPGYVAGE
EHGMVAAKED LPQESLSWAE AKAAAERLEL SGYKGWSLPT QQELSLLYKN QAIVGGFRDY
SYYWSGSEVD NQKAWALDFY NGEKVLSVKS GALTGIRRIR AIRKF
|
|---|
| |