Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0497 |
Symbol | |
ID | 6462042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 486311 |
End bp | 487054 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642726785 |
Product | pseudouridine synthase |
Protein accession | YP_002017440 |
Protein GI | 194335646 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.196452 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGA GTAATAAAGA TGATGAAGTC AGAATTAACC GATATCTCGC CTCGTGTGGC ATAGCCTCAC GCAGGGCTGC CGACCAGCTC GTGCTCGATG GCAGGGTTAT GGTCAACGGC ACCGTCATTA CCACACCAGG CATCAAGGTA AGCCCCACTC GTGACGAGGT CATTGTAGAC GGTGAAAAAT TTGCCCAGCC TGAGCACCGC AAGGTCTACA TTCTCTTCAA CAAACCCAGA AACGTCATCA CCACCAACAG CGACGAAAAA AATCGGGAGA TGGTACTCGA TTTTATTGAT GTCGAAGAGC GGGTCTTTCC CGTTGGTCGC CTCGACCGGA AAACAACCGG CGTCATCCTG CTGACCAATG ATGGAACACT GGCCCATAAA TTGATGCACC CTTCATCAAA TGTGAAAAAA GAGTATATTG CTGAGCTTTC TGAAAAATTC ACGCCAAATC TTCTGCCGCA ACTGACAGGA GGGATGCGTT TGAAAGATAC CGGGGAAAAG GTCAGTCCCT GCCGCGCAAA AATACTGGAA GATGGCATGC AGGTACTGGT AAGCATTCAT GAAGGAAAGA ACCACCAGGT CAGAAGAATG TTTGAAACCC TCGGTTTTGA AGTAAAGCGG CTTGAGCGGG TTGCCTATGC AGGCCTGCTG GCCGGAGAAC TACGGCGAGG CGAATGGCGA TACCTGAGCC GCAATGAGGT TCAGGCACTC TACAAATTAA CCGAAAGCCC ATAA
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Protein sequence | MKKSNKDDEV RINRYLASCG IASRRAADQL VLDGRVMVNG TVITTPGIKV SPTRDEVIVD GEKFAQPEHR KVYILFNKPR NVITTNSDEK NREMVLDFID VEERVFPVGR LDRKTTGVIL LTNDGTLAHK LMHPSSNVKK EYIAELSEKF TPNLLPQLTG GMRLKDTGEK VSPCRAKILE DGMQVLVSIH EGKNHQVRRM FETLGFEVKR LERVAYAGLL AGELRRGEWR YLSRNEVQAL YKLTESP
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