| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0452 |
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| Symbol | rpsA |
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| ID | 6462182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 438070 |
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| End bp | 439848 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642726739 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_002017395 |
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| Protein GI | 194335601 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000961926 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGAAG CATTCACACA GGAAAAAAAG GTCAAGGAAA GACCGGCAAG AAAAAAACTC
AAATTTTTTG CGCATTACGA GCCCGCTGAA CTTGCATTGA TGGAGCAGCT TTATTCAAGC
ACGCTCAACG AAATCACCGA AGACGAAATT ATCAAGGGCA GAATTGTCTC GATATCCAAC
AAGGATGTTA CCATTGATGT TGGTTTCAAG TCGGAAGGTA TCGTCTCTCT GCTTGAATTC
AGGGCTGAAG ATGAAGTACA GGTAGGCGAT GATGTTGAAG TCTATCTTGA GAACATCGAA
GACAAGATGG GACAGCTCAT TCTTTCCAAG AAGAAAGCCG ATGTTCTGAG AATCTGGGAC
AAGATCTATG ATTCAATCGA GAACGATACC ATCATCAATG GCAAGATCAT CAATCGTGTC
AAGGGTGGCA TGACGGTCTC CCTTTCTGGT GTCGAAGCCT TCCTTCCCGG TTCGCAGATT
GATGTAAAGC CGGTTCGTGA TTTCGATGCC CTTGTTGGCC AGACCATGGA CTTCAGGGTT
GTCAAAATCA ATCCGGTTAC CCAGAATATT GTTGTCAGCC ATAAAGTTAT TCTCGAAGAG
GCTTATGCCG CCCGTCGTGA AGAGATGCTC GCCAACATCA AGGTTGGCAT GGTACTCGAA
GGCACAGTCA AGAACATCAC CGACTTCGGT ATCTTTGTCG ATCTTGGCGG TCTGGACGGT
CTGGTACACA TTACCGATAT CACCTGGGGC AGAATCAACC ATCCTTCAGA GGTTGTTGAT
CTTGACCAGC CCATCAAGGT TGTGGTTGTC GGCTTTGACG AGAACACCAA GAGAGTCTCT
CTTGGCATGA AACAGCTTGA ATCACATCCT TGGGAAAATA TCGAGGTCAA ATATCCCGTC
ACATCCAAGG CACAGGGTCG TGTTGTCTCC ATTACCGATT ACGGCGCTTT TGTTGAAATC
GAAAAGGGTA TCGAAGGCCT CGTCCACATC TCGGAAATGA GTTGGACCCA GCACATCAAG
CATCCAGGGC AGTTCGTCAC CTTGGGGCAG GAAGTCGAAT GTGTGATCCT CAATATCGAC
AAGGATCATA CCAAGCTCTC CCTCTCCATG AAACGGGTGA ACGAAGATCC ATGGATTGCC
CTTTCAGAAA AATATATCGA AGGTTCACTG CACAAGGGAA CAGTCAGCAA CATCACCGAT
TTCGGTGTCT TTGTTGAGCT TGAGCCCGGT GTTGACGGTC TGGTACACAT TTCCGACCTC
TCATGGACCA AAAAAATCCG TCATCCAAGT GAACTGGTCA AAAAGAACCA GGATCTGGAA
GTCAAAGTAC TCAAGTTTGA CGTACATGCA CGCCGTATTG CCCTCGGTCA CAAGCAGATC
AACCAGGATC CCTGGGACGA GTTCGAGCAG AAATATGCAG TAGGCGCCGA AACACCCGGA
GAGATCTCAC AGATCATCGA GAAAGGCGTT ATTGTCATTC TTCCTGGAGA TGTCGATGGA
TTTGTTCCAG TATCACATCT GCTTCAGGGT GGCGTAAAGG ATATTCACTC ATCCTTCAAG
ATTGGTGATG CCCTGCCGCT TCGTGTCATT GAATTCGACA AGGAGAACAA GCGCATCATT
CTCTCAGCCC TTGAGTACTT CAAAGACAAA AACAAGGAAG AGATCGAAGC CTACCTGGCA
GCTCATCCCA ATGAGAAAAA AGAGATTGAG GCAGCAACCG CTGAACTCGA ACCTCCGGTC
AAATCCAGCG AGAAAAAAGT GAGCGAAAGC GTTAAATAA
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| Protein sequence | MAEAFTQEKK VKERPARKKL KFFAHYEPAE LALMEQLYSS TLNEITEDEI IKGRIVSISN
KDVTIDVGFK SEGIVSLLEF RAEDEVQVGD DVEVYLENIE DKMGQLILSK KKADVLRIWD
KIYDSIENDT IINGKIINRV KGGMTVSLSG VEAFLPGSQI DVKPVRDFDA LVGQTMDFRV
VKINPVTQNI VVSHKVILEE AYAARREEML ANIKVGMVLE GTVKNITDFG IFVDLGGLDG
LVHITDITWG RINHPSEVVD LDQPIKVVVV GFDENTKRVS LGMKQLESHP WENIEVKYPV
TSKAQGRVVS ITDYGAFVEI EKGIEGLVHI SEMSWTQHIK HPGQFVTLGQ EVECVILNID
KDHTKLSLSM KRVNEDPWIA LSEKYIEGSL HKGTVSNITD FGVFVELEPG VDGLVHISDL
SWTKKIRHPS ELVKKNQDLE VKVLKFDVHA RRIALGHKQI NQDPWDEFEQ KYAVGAETPG
EISQIIEKGV IVILPGDVDG FVPVSHLLQG GVKDIHSSFK IGDALPLRVI EFDKENKRII
LSALEYFKDK NKEEIEAYLA AHPNEKKEIE AATAELEPPV KSSEKKVSES VK
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