| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0381 |
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| Symbol | |
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| ID | 6462380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 365832 |
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| End bp | 367169 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642726669 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_002017327 |
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| Protein GI | 194335533 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0230254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCTAT GGATTTGTCT GATTGCTTTT GCAGGGATGT TTATTGCGCT GCCGCTGTAT
GGAGATCCGA TTGATCTTTC GACAGCCTTG CAGAAGGCAA GAGAGTATGA TGCCCGGTTA
GGTGCCGCAC AGGCTGATAA TCTGATATAC AGGGAGGAAG TTGGCAGGGC GAGGGCCCAG
TTGCGCCCCT CTGTACGTAT GAACGCAGCA AGGGGTAGAA ATGCGACGCA ATATACCAGC
CTTGCAGGGA GAACGACTGC CAGTTATTAT AATTCGATTA ACTACGGTGT TTCAGTTCGC
CAGCCGTTGC TTAACTTGTC GAATTTTGTT GGCTATAAGC AGGCTAAGGC TGTGGCTGTA
AAAAGTGATA TTGACCTTCA GAAAGAGGAT GCTTCGCTGA TGGTCAGGAT AGCAGAGGCC
TATTGTAATG CCTTGTATGC AGAGGATAAC CTTGATTTCA GTCAAACGCT CGTCAAGGCA
GCAGAGGAGC AGCTTCAGCA GGCTAAAAAA CGTTTTGAGA AGGGGTTTGG TACAGTTACC
GAGATCAGCG AGGCACAGGC AGGTTATGAT ATGGCGCTGG CTGATGGATT GGAGATTGTC
AATAGTGTTG AGTTCACCCG TCGTGAACTG GAGCATCTTA CGGGAGAGTA TCCTGATGAA
CTCTGTAGAG TTGTGCCTGA AAAGCTGCTT TTGGCCCAGC CGGAACCCGG AAATGTTCAA
TCATGGATTG ATCTGGCTCT TGTCAATAAT TACGATGTGG TTGGCGGACA CCAGGAAATC
AAGATTGCAA AAAAGGAGAT CGAAAAACAG AAATTTTCCC GTTATCCAAC GGTTGATCTT
GTTGCCGGGA GAAACTACTC GGAGAGTGAA AATAATTATT CAATCGGTTC TATTTACGAT
ACCTATTCGG TCAGTCTGCA GATGAGTATG CCAATTTATA CCGGTGGCTA CGCAAGTGCT
TCTGTGCGTC AAGCATATGC CAAACGGCTC AAGGCAGAGG AGCAACTCAG TGCCCAGGAA
AGGGGAGTTC AGTCTGATGT TCGCAAGTAC TACAACGGGA TTGTCAGCAG TATCGCCCAG
ATTCATGCCT ATGAACAGGC GGTTCAATCT CATGAAATTG CCTTGACCGG TACGAAAAAA
GGATTTGAAG CAGGACTGCG TACGAATGTC GATGTTCTCG ATGCTCAACA GAAGCTTTTT
TCAAGCAGAA GAAATCTTGC GAAATCGCGT TACCAGTATA TCCTCAATCG CCTTATGCTC
AAGCAAGCCT CAGGGACGCT GTCCGCCGGT GACGTTGAAG AGGTGAACGG ATGGCTTGCG
ACGACAAAAA GGCTATAA
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| Protein sequence | MKLWICLIAF AGMFIALPLY GDPIDLSTAL QKAREYDARL GAAQADNLIY REEVGRARAQ
LRPSVRMNAA RGRNATQYTS LAGRTTASYY NSINYGVSVR QPLLNLSNFV GYKQAKAVAV
KSDIDLQKED ASLMVRIAEA YCNALYAEDN LDFSQTLVKA AEEQLQQAKK RFEKGFGTVT
EISEAQAGYD MALADGLEIV NSVEFTRREL EHLTGEYPDE LCRVVPEKLL LAQPEPGNVQ
SWIDLALVNN YDVVGGHQEI KIAKKEIEKQ KFSRYPTVDL VAGRNYSESE NNYSIGSIYD
TYSVSLQMSM PIYTGGYASA SVRQAYAKRL KAEEQLSAQE RGVQSDVRKY YNGIVSSIAQ
IHAYEQAVQS HEIALTGTKK GFEAGLRTNV DVLDAQQKLF SSRRNLAKSR YQYILNRLML
KQASGTLSAG DVEEVNGWLA TTKRL
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