| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0380 |
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| Symbol | |
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| ID | 6462381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 364612 |
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| End bp | 365793 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642726668 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_002017326 |
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| Protein GI | 194335532 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000127057 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATTC GTGATATAAT GGCAAAGGTG AAGCTTGCTC CAGACGAGAA GGAGACAGGT
AACAAGGGTG AGGAGTATCG TGATACCCGC GGTCCCGTAA AGCTCGGCAT ATGGATATTA
CTTATCGGAT TTGGCAGCTT TCTGCTTTGG GCTGCCTTTG CCCCGCTTGA TGAGGGTGTT
CCCTGTCAGG GATTGGTCAG TATAGCTACA AAGCGCAAGG TTGTGGAAAA TCTGCGTGGA
GGCAGGGTCG AGAAAGTTAA TGTTCGGGAG GGTCAGATGG TTAAAGAGGG AGATGTGCTG
ATCATGCTCG ACAGTCAGAC GGCAAGGGCT CGTTATGATG AGGTGCATCA GCATTATCTG
GGCATGCGTG CAACGGCTGA CCGTTTAATT GCTGAAATGC GTGGTGCCCC GTCAATTACG
TTTCATAAAG ATTTGTTGAC AGAACCTGAT CGTCAACTGG CTCAACAGAA TATGCAGAAC
CAGCGCCAGC TTTTTTTGTC GCGCCGTGTA TCGCTGCAGA TTTTGAATAA GCAACTTGAG
GCCATGACAT CATTGGCACG AGAGGGTTAT GCGCCATTAA ACCAGCAGCA CGAATTAGAG
TTGAAGATTG CAGAATTCAA GAGCAGTACC GCCTCCCAAC TGGCACAGGT ACAGCTTGAA
GTGGAGGCCG ATGGTGAAAA AACCAGAGCG CTTGCTGAAG AGCTGGCCGA TACGGAGGTA
CGCTCACCAG CATCAGGGCA GGTCGTTGGT TTGCAGGTGC AGACAGTAGG TGCGGTTATC
CAGCCTGGTC AGAAAATTAT GGATATTGTG CCGCTTCATG AGAGCCTTCT TATTGACACC
AAAGTTGCTC CTCATCTTAT CGACAGTATT CATAACGGTT TGCCGGTTGA TGTGAGCTTT
TCTTCATTTG CACACTCTCC GCAGCTCGTT GTAGAGGGAG TAGTTGAATC GCTCTCGAAA
GATATTGTAA CAGATCCCCA GGTTAATCCG ATGACACCAG GTGCATCCTA TTACCTTGCA
AGAGTCTCTG TGACTCCAGA AGGAATGACC TCCCTTGGCC GTCGGGAGAT GCAGCCGGGA
ATGCCGGTAC AGGTCGTTAT CAAGACAGGC GAAAGGTCGT TGCTGACCTA TCTTGTCGAT
CCGTTGATCA AGAGGATTGC GGTATCAATG AAAGAGGAGT AG
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| Protein sequence | MSIRDIMAKV KLAPDEKETG NKGEEYRDTR GPVKLGIWIL LIGFGSFLLW AAFAPLDEGV
PCQGLVSIAT KRKVVENLRG GRVEKVNVRE GQMVKEGDVL IMLDSQTARA RYDEVHQHYL
GMRATADRLI AEMRGAPSIT FHKDLLTEPD RQLAQQNMQN QRQLFLSRRV SLQILNKQLE
AMTSLAREGY APLNQQHELE LKIAEFKSST ASQLAQVQLE VEADGEKTRA LAEELADTEV
RSPASGQVVG LQVQTVGAVI QPGQKIMDIV PLHESLLIDT KVAPHLIDSI HNGLPVDVSF
SSFAHSPQLV VEGVVESLSK DIVTDPQVNP MTPGASYYLA RVSVTPEGMT SLGRREMQPG
MPVQVVIKTG ERSLLTYLVD PLIKRIAVSM KEE
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