| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0379 |
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| Symbol | |
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| ID | 6462382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 362866 |
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| End bp | 364578 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 642726667 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_002017325 |
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| Protein GI | 194335531 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.092179 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCTG AATTTTTTAA TCGCAGTGCA TTATCCCGTC AGCTCTGGGA GTTTCGACGA
GAGTTTATGT GGGTTGGTAT TTTCAGTATG ATTGCCAATA TCCTGATGCT GACCCCCACC
ATCTATATGC TTCAGGTCTA TGGTCGTGTC ATGAAGAGCG GCAGTGAGCT GACGCTTCTT
ATGGTGACCT TTTTTCTGAT CTTTTTTTAT GCGGTTATGG CTTTTGCCGA GTGGCTTCGT
TCGCGCCTTT TGGTACGGGC GGGGGTCAGG CTCGATGAAG CGCTCAATTC ACTGGTTTTT
AAGGCAAGCT TTGAAGCATA CCTGAACCGT ACCAAACACA ATGTTGCAGA GGCCTTTTCG
GATCTGACCA ATATTCGCCA GTTTCTGACG GCCAATGGCA TGATTGCCTT TTTCGATACT
CCGTGGACGC CTGTTTATAT TGCGGTAATC TTTTTTCTCA GTCCGTTTCT TGGTTATCTC
TCTATCTTTT TTGCCTTTAT TCAGCTTGGC GTGACCTGGC TCAGCAATCG GATGAGCATG
AAGGAGATAC AGATTGCGGC TGATGCAGGT AACAACAGTT ACCGCTATGT GCAGAGCAAA
CTTCGAAATA TTGAACCGAT ACATGCTATG GGTATGGCCG GGAACCTTCG TCAACGCTGG
TTCATGTTGC ATGACGCTTC GCTGGCCAAG GCAGAGGACT CTCTGGATCG TCAGCATCGC
CAGCAGGCAT TTGCCAAGTT TGTGCGTTAC AGCATGCAGT CGATGACGCT TGGTGCGGGT
GCTCTTATGG TTATTGAAGG AAAAATGTCA GCCGGTTCAA TGATTGCTGC CAATGTGCTG
ATGTCGAGAG CTCTTCAGCC ACTTGATCTG GTGGTTGCTA CCTGGAAACC ATTTGTTCAG
GCTCGCACGG CCTTTGTTCG TTTGGAGAAA CTCCTTGAGG ATTTTCCGGA GCGTCATCCT
GGAACCAAAC ATCAGGATCC TTTTGGTGAG ATAAGGCTTG AAGGACTATC TGCTTCTGCC
GAGGGACGTG AGGCCCCCAT TCTTGATGAT CTTACAGCAA TGTTTCCTTC TGGCAAGGTG
ACCGTAGTAC TTGGCCCATC TGGATCGGGA AAATCAACCT TGGCGCGCTG TATTGTCGGG
ATATGGCCCG ATACAAAAGG GCGTGTTCTC ATCGACGGTG AGCCGATTGA GAGCTGGGAC
AGGATGGAAC TTGGGCCGCA TATTGGTTAT CTCCCGCAGG ACATTGAGCT CTTTGATGGA
TCGATTGCTG ACAATATTGC CCGTTTTGCT GAGGTTGATT CTCAAAAAGT GATCGAGGCA
GCTAAGCGTA CGGGTATTCA TGAGATGATT TTGCGTTTTC CGCATGGTTA CAATACGCAG
ATCGGTGATG CCGGAGGAAT GCTGTCGGGT GGTCAGCGAC AGCGTCTGGG CCTTGCCAGA
GCGATGTATG GCAATCCAGC TCTTCTGGTG CTCGATGAAC CAAACGCGAA TCTTGATGAT
GCCGGTGAAC GTTCATTGCT GGAGGCAGTC AAGGATTTGA GAAAAGCTGG TAAAACAGTT
ATTCTTGTAA CGCATCGGCC CACTGTTCTT GCTGCTGCAG ATTTGATTGT TTTGATGCAG
AATGGAAAAA TTGTTCGTTG TGGAGCCCGT GATGAAGTTT TATCGGCTTT ACGTGCAGGG
AGCGCCCGGC CAGCTTCGGG TACCCCGGGC TGA
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| Protein sequence | MKPEFFNRSA LSRQLWEFRR EFMWVGIFSM IANILMLTPT IYMLQVYGRV MKSGSELTLL
MVTFFLIFFY AVMAFAEWLR SRLLVRAGVR LDEALNSLVF KASFEAYLNR TKHNVAEAFS
DLTNIRQFLT ANGMIAFFDT PWTPVYIAVI FFLSPFLGYL SIFFAFIQLG VTWLSNRMSM
KEIQIAADAG NNSYRYVQSK LRNIEPIHAM GMAGNLRQRW FMLHDASLAK AEDSLDRQHR
QQAFAKFVRY SMQSMTLGAG ALMVIEGKMS AGSMIAANVL MSRALQPLDL VVATWKPFVQ
ARTAFVRLEK LLEDFPERHP GTKHQDPFGE IRLEGLSASA EGREAPILDD LTAMFPSGKV
TVVLGPSGSG KSTLARCIVG IWPDTKGRVL IDGEPIESWD RMELGPHIGY LPQDIELFDG
SIADNIARFA EVDSQKVIEA AKRTGIHEMI LRFPHGYNTQ IGDAGGMLSG GQRQRLGLAR
AMYGNPALLV LDEPNANLDD AGERSLLEAV KDLRKAGKTV ILVTHRPTVL AAADLIVLMQ
NGKIVRCGAR DEVLSALRAG SARPASGTPG
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