| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0315 |
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| Symbol | rpsD |
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| ID | 6462177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 300815 |
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| End bp | 301426 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 642726607 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_002017265 |
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| Protein GI | 194335471 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000187386 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT TCAGAGGCTC AATAACAAAA GTATCCCGCA GGTTAGGTAT TGCGCTTGCA
CCAAAGGCAG AAAAATATCT TGAAAGACGT CCTTTTCCTC CAGGTCAGCA TGGTCAGGGT
CGGAAAGGAA AAGTTTCTGA ATATGCTCTC CAGCTTAGAG AGAAACAGAA GATGAAATAT
CTTTACGGTA TTCTCGAAAA GCAATTCAGG AATTATTATA AAAAAGCAGT ATCACAGAGA
GGTGTTACAG GCGATAACCT TGTCAAGCTT CTTGAGAGAC GTTTTGACAA CGTTGTCTTT
CGTGCCGGAT TTGCTCCTTC ACGTTCAGGC GCACGCCAGC TTGTTACGCA CGGCCATCTT
CTCATAAACG GCAAGAAGGT CGATATTCCA TCCTATATCG TTTCTCCATC TGAAGTCATT
GAATTCCGTC AGAGAAGCAA AAATATGGGA GCCGTAACGG ATTCCCTCAA TAAGGCCCCT
GAATCCCGTA TTCCTTCATG GATACAGGTT GACAAGGCCA ACCAGAAAGC TGTATTTCTG
AGTGTACCTG AGAGAGTGGA AGTACAGGAG CCTTTCAACG AACAGTTGGT CGTTGAATTG
TACTCGAAGT GA
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| Protein sequence | MARFRGSITK VSRRLGIALA PKAEKYLERR PFPPGQHGQG RKGKVSEYAL QLREKQKMKY
LYGILEKQFR NYYKKAVSQR GVTGDNLVKL LERRFDNVVF RAGFAPSRSG ARQLVTHGHL
LINGKKVDIP SYIVSPSEVI EFRQRSKNMG AVTDSLNKAP ESRIPSWIQV DKANQKAVFL
SVPERVEVQE PFNEQLVVEL YSK
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