Gene Ppha_0306 details

Gene Information

• Locus tag: Ppha_0306
• Symbol: rpsE
• ID: 6462583
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelodictyon phaeoclathratiforme BU-1
• Kingdom: Bacteria
• Replicon accession: NC_011060
• Strand: +
• Start bp: 295975
• End bp: 296493
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 642726598
• Product: 30S ribosomal protein S5
• Protein accession: YP_002017256
• Protein GI: 194335462
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0963107
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAAA CATCTGCTAA GAATATCAGG CCCGGTGAAT TAAATCTGAA AGAAAAGCTG 
GTTCATATCA ACAGGACTGC AAAGGTTGTC AAAGGCGGTA AACGCTTCGG ATTCAACGCT 
ATTGTTGTGG TTGGCGATAA AGAAGGCCAT GTAGGCTACG GGCTTGGAAA AGCAAACGAA 
GTACAGGATG CCATTGCAAA AGGCATCGAA GACGGAAAGA AAAATGTGAT CAAGGTGCCG 
ATTGTGAAGG GTACCATACC TCATCAGATT GTTGCCAAGT TTGGTTCGGC AAAGGTTATG 
ATGAAGCCGG CAACCCCTGG TACCGGTCTT ATTGCTGGTG GAGCGGTGAG GGCTGTGCTT 
GAAATGGCAG GTATTCATGA CATTCTGACA AAATCACTTG GATCTTCCAA TCCGCACAAT 
GTGGTTAAGG CTGCCATCAA GGGACTTCAG AGCATCTCTG ATGCCTATGA TGTTGGTGAA 
AGACGGTCAA AGAGCCTGAA AGAGGTTTTT GAAAGCTAA 

 

Protein sequence

MAKTSAKNIR PGELNLKEKL VHINRTAKVV KGGKRFGFNA IVVVGDKEGH VGYGLGKANE 
VQDAIAKGIE DGKKNVIKVP IVKGTIPHQI VAKFGSAKVM MKPATPGTGL IAGGAVRAVL 
EMAGIHDILT KSLGSSNPHN VVKAAIKGLQ SISDAYDVGE RRSKSLKEVF ES