| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0226 |
|---|
| Symbol | |
|---|
| ID | 6462170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 218314 |
|---|
| End bp | 219063 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642726521 |
|---|
| Product | surface antigen msp4 family protein |
|---|
| Protein accession | YP_002017180 |
|---|
| Protein GI | 194335386 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000460026 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CGCTCGCACT TCTCGTACTC CTGGCTGTAA CAGGTGTTGC AAGTACCCCT
GTACAAGCTG CAACCCACTA CATAAGCGGT ATGGGCGGCA TTTCACGAAT GAATAACATG
ACACCTGAAG AGTCCTATCA GGGCGCTGGA GGCAATAGCA ATTCTAATTT TGACCTCGGT
TCGGGTGTCA ACGCACTGGG AGCTATTGGC TGCGATTATG GGAACTACAG GCTTGAGGGC
GAAGTCGGCT ATCAGCAGAA CACATTGAAG TCCGGCATCA GCAACATGGA TAATGTATTA
CAGTATTATC CACAGGAGGG ATCGCGCTAT GACATGAGGG GTGATGTTTC AACACTGTCA
TTGATGGGTA ACGGTTACTA CGACGTGCAC CTCGGCGGTG GGGTTGATTT CTATGCTACG
GCTGGCGTTG GTATTGCCCA AGTTTCATTT CATGATATGA ATTTCTCATA TAACTACGAT
CCAGTAACCA ATGCCTTATA TGATAATCCG AATCCGGGAT ATAACGATCA CGCAACCACC
CTTGCCTATC AGCTTGGTGC AGGCCTTGCT TTTCCTCTGT CCCAGAACGT TAAGCTGGAT
CTCCGCTACC GCTATTTCGC AACAACGGAC TTTACCTATA CAAATGACTG GGTTGACGCT
TCCAGCAGCA GCAATACGCC GGTCGCCTCA GGAATAAATA GCAACATTGT CAGTCACAGT
GCTCTGCTTG GTCTGAGAGT CGAGTTCTAA
|
|---|
| Protein sequence | MKKTLALLVL LAVTGVASTP VQAATHYISG MGGISRMNNM TPEESYQGAG GNSNSNFDLG
SGVNALGAIG CDYGNYRLEG EVGYQQNTLK SGISNMDNVL QYYPQEGSRY DMRGDVSTLS
LMGNGYYDVH LGGGVDFYAT AGVGIAQVSF HDMNFSYNYD PVTNALYDNP NPGYNDHATT
LAYQLGAGLA FPLSQNVKLD LRYRYFATTD FTYTNDWVDA SSSSNTPVAS GINSNIVSHS
ALLGLRVEF
|
|---|
| |