| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0151 |
|---|
| Symbol | |
|---|
| ID | 6462526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 159156 |
|---|
| End bp | 159569 |
|---|
| Gene Length | 414 bp |
|---|
| Protein Length | 137 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642726453 |
|---|
| Product | PilT protein domain protein |
|---|
| Protein accession | YP_002017113 |
|---|
| Protein GI | 194335319 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1487] Predicted nucleic acid-binding protein, contains PIN domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.85559 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTCT ACATGCTTGA TACAAATATT GCCAGTCATG TTATCAAAGG AGACATTCCT
CTTGTGCGAG AGCGGCTGAT TGCTGTACCA ATACAGCGCG TTGTGATATC TTCAGTTACA
CAGGCAGAAT TACTCTATGG CCTGGCAAAA CGAACCTATC CGAAGGGCCT TACCGCCCGC
GTCCATGAGT TTTTGATCCG GGTAAAAATA TTGGCCTGGG ATAAAGAGGT TGCCATCGTT
TATGGTGATC TTCGAGCCAA GTGCGAAACC ACAGGTGTGA CGCTCTCACC ACTTGACCTC
ATGATTGCGG CTCATGCTCA GGCAGTCAAT GCCATTCTTG TTACGGGAGA TAAAGCGTTT
ACCAGAATCC AAGATCGATT AATTATAGAA AATTGGACAC TGTCACCAGA CTGA
|
|---|
| Protein sequence | MSLYMLDTNI ASHVIKGDIP LVRERLIAVP IQRVVISSVT QAELLYGLAK RTYPKGLTAR
VHEFLIRVKI LAWDKEVAIV YGDLRAKCET TGVTLSPLDL MIAAHAQAVN AILVTGDKAF
TRIQDRLIIE NWTLSPD
|
|---|
| |