| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0084 |
|---|
| Symbol | |
|---|
| ID | 6463152 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 89794 |
|---|
| End bp | 90735 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642726387 |
|---|
| Product | domain of unknown function DUF1731 |
|---|
| Protein accession | YP_002017057 |
|---|
| Protein GI | 194335263 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1090] Predicted nucleoside-diphosphate sugar epimerase |
|---|
| TIGRFAM ID | [TIGR01777] conserved hypothetical protein TIGR01777 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGGTC ATGTTGTTGT TACCGGAGCT ACCGGTGTGA TAGGCGCTGA GCTTGCCCGG
AGGCTGATTG AGCGTGGTGA GAAGCTCGTT TTGCTTGTTC GTTCGCCTGA GGCAGCTTCT
CTGAAAATTC CTGGAGCGGC GGCTTATGTC AGGTGGGATT CGGAGATGGC GAGCGGTGAG
TGGAGCGCTT CTGTTGATGG CGCCAAAGCT GTCATTCATC TTGCCGGAAA ACCTTTGCTT
GAAAGTCGCT GGAGCGAGGA GCACAAGGCG GAGTGTTATA ATTCAAGAAT TCTTGGTACC
CGTCATATCG TTTCGGCCAT TGCCAGTGCG TCGGAAAAAC CTCAGGTATT TATCTCATCA
TCAGCCATTG GTTATTATGG CTCCTTTTTC AGTTGTGACG ATACGGCCGA TATTTCCGAG
TCTGGCAGGG CGGGCAGCGA TTTTCTTGCG AAAATCTGTT TTGACTGGGA AAAAGAGGCG
CTTGAAGCTG AAAAGAGTGG CGTGCGCCTT GTGTTGTTGA GGACGGGTAT TGTGTTGACG
ACAAGAGGCG GGATGCTGCA GAAGATGCTT GCGCCCTTCC GCTTTTTTCT TGGCGGACCC
ATTGGTTCAG GTCTTCAGTG CATCTCCTGG ATTCATATTG ATGACGAGCT TGCCTGTATT
CTTGAGGCCC TTGATAATGC GGCTTACTCT GGAGCAATGA ATGCGGTCAG TCCGCAACCT
GTTTCCATGA ATGATTTTGC CAAAGGGCTT GGAGCCGTTC TTGGCCGTCC ATCTCTGTTA
CCGGTACCCC GGTTTGCTGT TGATATGCTG ATGGGTGAAG GAGGAGAGTA TGCGGTAAAA
GGCCAGAGAG TAAAGCCTGT AGTTTTACAG AAGCACGGAT TTGCCTTCCG CTATCCGAAA
CTTTCTGATG CTTTAGCTGA TTTGATTGCC AATAAGAAAT AA
|
|---|
| Protein sequence | MRGHVVVTGA TGVIGAELAR RLIERGEKLV LLVRSPEAAS LKIPGAAAYV RWDSEMASGE
WSASVDGAKA VIHLAGKPLL ESRWSEEHKA ECYNSRILGT RHIVSAIASA SEKPQVFISS
SAIGYYGSFF SCDDTADISE SGRAGSDFLA KICFDWEKEA LEAEKSGVRL VLLRTGIVLT
TRGGMLQKML APFRFFLGGP IGSGLQCISW IHIDDELACI LEALDNAAYS GAMNAVSPQP
VSMNDFAKGL GAVLGRPSLL PVPRFAVDML MGEGGEYAVK GQRVKPVVLQ KHGFAFRYPK
LSDALADLIA NKK
|
|---|
| |