Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0078 |
Symbol | prfA |
ID | 6462832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 80550 |
End bp | 81623 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642726380 |
Product | peptide chain release factor 1 |
Protein accession | YP_002017051 |
Protein GI | 194335257 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0216] Protein chain release factor A |
TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCGACA AACTGCAATC CATAAAAGAG AAACATCTTG ATCTTGAACA ACTGCTTTCT GACCCGAATG CGGCCGCCGA TCAAGTCCGC TTCCGAAAAC TCAACAAGGA GTACAGCGAC CTCCGTGAAA TCGTACAGGC CTACGACCTC TATGCTGCCA CAAAAACAGA GCTTGATGAG TCACGCCAAT TACTGAAAAG CGAAAGCGAC GCAGAGATGA AAGAGCTTGT ACAGGCTGAA ATCAGCGAAC TGCAGAAAAA GCTGCCAGAA CTTGAGCAAC AGCTCAAAAT ACTGCTCCTG CCAAAAGAAG AGGCCGATTC TCGCAACGTC ATCATCGAAA TCCGGGCGGG TACCGGCGGA GAAGAGGCCG CACTTTTTGC TGCTGACCTG ACAAGAATGT ACCAGCGGTA TGCCGAACAC CAGGGATGGC AGTGCGAAAC ACTGCACTTC AATGAAAGCT CCGTTCCTGG CGGATTCCGT GAAATTACCC TCAGTGTCAA CGGCCATGAT GTCTATGGCA CCATGAAGTA TGAAAGCGGT GTACACAGGG TACAGCGTGT CCCCGACACC GAAACACAGG GGCGTATTCA TACCTCTGCG GTAAGCGTTG CCGTATTACC GGAAGCAGAG GAAGTCGATG TTGAGATCCG CCGTGAAGAC CTGCGCTTCG ACACCTATCG AAGCGGCGGA AAAGGGGGAC AGAACGTCAA CAAGGTAGAG ACCGCAGTCA GAATCACCCA CATGCCAACC GGCATAGTCT CTGCCTGCCA GGAGCAGCGC TCCCAGCTCC AGAACAAGGA GAGAGCCATG CAGATGCTCC GAACAAAACT GTACGACATC CAACTTGCCG AACAACAGCA GCAACGAGCC GATCTGCGCC GTTCGATGGT CACAACCGGA GACCGGAGCG CAAAAATCCG AACCTACAAC TACCCGCAGT CGCGCGTAAC AGACCACCGT ATCGCCTTCA CCAGCCACGC CCTTCCACAG ATCCTGCAAG GCGACCTTCA GGATATCATC AATGCTCTCA AAATGCATGA CCAGGCCGCA CGTCTGCAGG CTGAGCTTGT ATAA
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Protein sequence | MLDKLQSIKE KHLDLEQLLS DPNAAADQVR FRKLNKEYSD LREIVQAYDL YAATKTELDE SRQLLKSESD AEMKELVQAE ISELQKKLPE LEQQLKILLL PKEEADSRNV IIEIRAGTGG EEAALFAADL TRMYQRYAEH QGWQCETLHF NESSVPGGFR EITLSVNGHD VYGTMKYESG VHRVQRVPDT ETQGRIHTSA VSVAVLPEAE EVDVEIRRED LRFDTYRSGG KGGQNVNKVE TAVRITHMPT GIVSACQEQR SQLQNKERAM QMLRTKLYDI QLAEQQQQRA DLRRSMVTTG DRSAKIRTYN YPQSRVTDHR IAFTSHALPQ ILQGDLQDII NALKMHDQAA RLQAELV
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