Gene Ppha_0078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0078 
SymbolprfA 
ID6462832 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp80550 
End bp81623 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content53% 
IMG OID642726380 
Productpeptide chain release factor 1 
Protein accessionYP_002017051 
Protein GI194335257 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCGACA AACTGCAATC CATAAAAGAG AAACATCTTG ATCTTGAACA ACTGCTTTCT 
GACCCGAATG CGGCCGCCGA TCAAGTCCGC TTCCGAAAAC TCAACAAGGA GTACAGCGAC
CTCCGTGAAA TCGTACAGGC CTACGACCTC TATGCTGCCA CAAAAACAGA GCTTGATGAG
TCACGCCAAT TACTGAAAAG CGAAAGCGAC GCAGAGATGA AAGAGCTTGT ACAGGCTGAA
ATCAGCGAAC TGCAGAAAAA GCTGCCAGAA CTTGAGCAAC AGCTCAAAAT ACTGCTCCTG
CCAAAAGAAG AGGCCGATTC TCGCAACGTC ATCATCGAAA TCCGGGCGGG TACCGGCGGA
GAAGAGGCCG CACTTTTTGC TGCTGACCTG ACAAGAATGT ACCAGCGGTA TGCCGAACAC
CAGGGATGGC AGTGCGAAAC ACTGCACTTC AATGAAAGCT CCGTTCCTGG CGGATTCCGT
GAAATTACCC TCAGTGTCAA CGGCCATGAT GTCTATGGCA CCATGAAGTA TGAAAGCGGT
GTACACAGGG TACAGCGTGT CCCCGACACC GAAACACAGG GGCGTATTCA TACCTCTGCG
GTAAGCGTTG CCGTATTACC GGAAGCAGAG GAAGTCGATG TTGAGATCCG CCGTGAAGAC
CTGCGCTTCG ACACCTATCG AAGCGGCGGA AAAGGGGGAC AGAACGTCAA CAAGGTAGAG
ACCGCAGTCA GAATCACCCA CATGCCAACC GGCATAGTCT CTGCCTGCCA GGAGCAGCGC
TCCCAGCTCC AGAACAAGGA GAGAGCCATG CAGATGCTCC GAACAAAACT GTACGACATC
CAACTTGCCG AACAACAGCA GCAACGAGCC GATCTGCGCC GTTCGATGGT CACAACCGGA
GACCGGAGCG CAAAAATCCG AACCTACAAC TACCCGCAGT CGCGCGTAAC AGACCACCGT
ATCGCCTTCA CCAGCCACGC CCTTCCACAG ATCCTGCAAG GCGACCTTCA GGATATCATC
AATGCTCTCA AAATGCATGA CCAGGCCGCA CGTCTGCAGG CTGAGCTTGT ATAA
 
Protein sequence
MLDKLQSIKE KHLDLEQLLS DPNAAADQVR FRKLNKEYSD LREIVQAYDL YAATKTELDE 
SRQLLKSESD AEMKELVQAE ISELQKKLPE LEQQLKILLL PKEEADSRNV IIEIRAGTGG
EEAALFAADL TRMYQRYAEH QGWQCETLHF NESSVPGGFR EITLSVNGHD VYGTMKYESG
VHRVQRVPDT ETQGRIHTSA VSVAVLPEAE EVDVEIRRED LRFDTYRSGG KGGQNVNKVE
TAVRITHMPT GIVSACQEQR SQLQNKERAM QMLRTKLYDI QLAEQQQQRA DLRRSMVTTG
DRSAKIRTYN YPQSRVTDHR IAFTSHALPQ ILQGDLQDII NALKMHDQAA RLQAELV