| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0014 |
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| Symbol | secF |
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| ID | 6462169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 15033 |
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| End bp | 15968 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642726318 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_002016990 |
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| Protein GI | 194335196 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00246116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGATCT TTCATAATAC CAGCTTTAAC TTTATCCGAT ATCGTAAAAT TGCGTACGGT
TTTTCTCTTG TTCTGCTTGT TTCGGGCCTT GTTTCTCTCG CTGTTAAAGG GCTGAACTAC
GGTATTGATT TCAGGGGAGG TTCTGAAGTG GTGATACGCT TCGAGAAAGA TGCTGATGTC
GGCCAGATTC GTTCGATACT TGATGCGGCA GGTGTTTCAG GCACGCTGAA GCAGTATGGT
ATGGATCGCT CCTTTCTGTT CAGCACGGTT TTCCAGGGAG ATACGGGGGA GTTGAAATCG
CTTGTATCCA ATGCACTTAA TGATCGGATC AAGGATAATC GTCATGAAAT TGTTCGCATT
GATGCTGTGG GTCCGAGTAT TGCATCCGAT TTGAAATGGT CTGCGGTTAA AGCTCTTGTT
GCAGCCCTTA TTGCGATTCT TATTTATGTC GGCATCCGGT TTGAAACAAA ATTTGCCGCA
ACGGGTGTTC TTGCGATTTT GCATGATGTG CTGACAGTTC TCGGAATTTT CAGTATTCTT
GGCGGCCTCT TTGCGTTTAT GCCCCTTGAA ATGGATCAGA GTATCATTGC GGCTTTCCTC
ACCATAGCAG GTTACTCCAT TACCGATACC GTTGTGGTTT ATGACCGTAT CAGAGAGAGG
ATCCGGGGTC AGAAACCCTC TGAATATGAA AGGATTTTCA ATGAAAGCAT GAACCAGACT
CTCAATCGTA CAATCATCAC CTCGGGGACG ACGCTGATCA GTGTTTTTGT ACTCTTTATC
TTTGCCGGAC CGGCAATCAG GGGTTTTGCC TTTGCCGTCT TTATTGGTAT CCTGATTGGT
ACCTACTCTT CAATCTTTGT GGCGGCACCT CTTGTCTATG ATTGGCTCAG GATTACAAAA
AGCTCCGTCC GTTTACGGGG AAGCAAGGTA TCCTGA
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| Protein sequence | MRIFHNTSFN FIRYRKIAYG FSLVLLVSGL VSLAVKGLNY GIDFRGGSEV VIRFEKDADV
GQIRSILDAA GVSGTLKQYG MDRSFLFSTV FQGDTGELKS LVSNALNDRI KDNRHEIVRI
DAVGPSIASD LKWSAVKALV AALIAILIYV GIRFETKFAA TGVLAILHDV LTVLGIFSIL
GGLFAFMPLE MDQSIIAAFL TIAGYSITDT VVVYDRIRER IRGQKPSEYE RIFNESMNQT
LNRTIITSGT TLISVFVLFI FAGPAIRGFA FAVFIGILIG TYSSIFVAAP LVYDWLRITK
SSVRLRGSKV S
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