Gene Paes_2206 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_2206 
Symbol 
ID6459725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp2379937 
End bp2381685 
Gene Length1749 bp 
Protein Length582 aa 
Translation table11 
GC content57% 
IMG OID642726182 
Producttype I secretion system ATPase 
Protein accessionYP_002016855 
Protein GI194334995 
COG category[R] General function prediction only 
COG ID[COG4618] ABC-type protease/lipase transport system, ATPase and permease components 
TIGRFAM ID[TIGR01842] type I secretion system ABC transporter, PrtD family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAACAAT CACAAAAGAA TATTGAGACA CAGGAGCTTT TTTCGCAGAT CTTTCCCTAT 
CTCATCAGGG TTTTTCTGAT CAGTTTTTTT ACCAATATTC TGGTCCTTGC CCCGAGTCTG
TATATGCTCG AGGTGTATGA CCGGGTGATT AACAGCCGGA GTTTTTCGAC GCTGCTGATG
CTGACCATTC TGGTTATCGG GCTCTATATC GTGCTCGAGC TGCTTGAATG GGTCAGGAGC
CGTCATATGC AGGAAGGTGC TCTTGAATTG GACAGGTCGC TGCGCGAGCG GGTGCTGCAC
GCGATCTTTG CGGCAAGGCT GCAGGGGACT CAGGCAGGCG GCGTGCAGCC TCTTAACGAT
CTGAAAACAA TTCGCGAGGC GTTGCCTTCA ACACCGTTTC TGTCGATGCT TGATGTGCCG
CTTTCGCTCT TGATTCTTGT GCTGCTCTTT CTGGTCAGTC CTCTTCTTGG CTGGATTGCC
GTCGTCGGCG CTTTGTTTCA GGCGGTTATC GGTTTTATGA ATGAACGCAG AACACATGAG
CCGTTCAGGG ATGCCAATCG CTACGCGACA GCTTCGCGCC ACTATGCGGA AGGCGCGTTG
AAAAACGCCC AGGTTATCGA ATCCATGGCT ATGTTGCCTG GTATTCATGC CCGGTGGCTC
AAACTGCAGC AGGCATTTCT TCGCGAACAG GCTATTGCGT CAGATCATGC AGGGAGCGGA
GCTGCGCTTT CCCGGATGGT ACAGCTGCTT CAGGGTTCGA TTTTGCTGGG GGCCGGTGGC
TGGCTCGCGC TTCAGGGCTT GCTCAGCGGC TCCCTTATGA TTGTCGGCTC TATCCTCGGA
GGACGCCTCC TGGCACCTCT TGTCCAGATT ATCACCGGCT GGCGTCAGAT CGAGGCTGCC
AGGGAAGCCT GGGGTCGTAT CGCGCTTCTC CTGAACACTT ATCCGGTGCC GGAGAAAGGG
ATGGCCCTGC CTTCTCCTGA AGGCAGGCTC AGCGTTGAAG GAGTTATTGC CGCTCCTCCA
GGCGGGGGGC AGCCTGTCCT CAAGGGGGTC AGTTTCGCAC TTGTCCCCGG AGATTCGCTG
GCCGTTGTCG GCCCTTCGGC TTCGGGGAAA ACCACGCTCG CTCGACTCCT GACGGGGATC
TGGCAGGCAC GTCAGGGCAC GGTCCGCCTG GACGGTATTG ATGTCTACGC ATGGGATAAG
GAGGAACTGG GACCACGGGT CGGCTATCTG CCGCAGGACG TCGAACTGTT TGACGGTACC
ATCGCCGAGA ATATTGCCCG CTTCGGCGAC ATTGATCGTT CGATGCTTGA AAAAGCGTGT
CGGCTGGCAG GTATCGACGC TTTGATCGAT CTTTTGCCTG ACAGGTACGA TACCCGGATC
GGTGCCGACG GAGCGTTTCT TTCCGGCGGC CAGCGACAGC GCGTCGGCCT TGCCCGCGCG
GTCTATGGCG ATCCCCGTTT TCTTGTGCTC GATGAGCCCG ATTCAAGTCT TGATGACGAG
GGCGATGCAT CGCTTCTTGA GCTGCTCAGG GCGCTGAAGC GCGACGGGGT TACGGTGGTG
GTGATCACTC AGCGAAAAAA TCTGCTCAGT GCGCTCGATC ACATGCTGGT ACTCATCGAC
GGACGGGTGC AGAAGTTCGG CTTGCGCGAC GAGGTCCTTG GATCCATGAG ATCGGACTCA
AAACCGAAAG CCGTCAACCG AGCGCCAGTT GTTTCTTCCA TGGTACCGGT TGCGGGGGGT
GGACGATGA
 
Protein sequence
MKQSQKNIET QELFSQIFPY LIRVFLISFF TNILVLAPSL YMLEVYDRVI NSRSFSTLLM 
LTILVIGLYI VLELLEWVRS RHMQEGALEL DRSLRERVLH AIFAARLQGT QAGGVQPLND
LKTIREALPS TPFLSMLDVP LSLLILVLLF LVSPLLGWIA VVGALFQAVI GFMNERRTHE
PFRDANRYAT ASRHYAEGAL KNAQVIESMA MLPGIHARWL KLQQAFLREQ AIASDHAGSG
AALSRMVQLL QGSILLGAGG WLALQGLLSG SLMIVGSILG GRLLAPLVQI ITGWRQIEAA
REAWGRIALL LNTYPVPEKG MALPSPEGRL SVEGVIAAPP GGGQPVLKGV SFALVPGDSL
AVVGPSASGK TTLARLLTGI WQARQGTVRL DGIDVYAWDK EELGPRVGYL PQDVELFDGT
IAENIARFGD IDRSMLEKAC RLAGIDALID LLPDRYDTRI GADGAFLSGG QRQRVGLARA
VYGDPRFLVL DEPDSSLDDE GDASLLELLR ALKRDGVTVV VITQRKNLLS ALDHMLVLID
GRVQKFGLRD EVLGSMRSDS KPKAVNRAPV VSSMVPVAGG GR