| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_1778 |
|---|
| Symbol | |
|---|
| ID | 6458872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | + |
|---|
| Start bp | 1938218 |
|---|
| End bp | 1941712 |
|---|
| Gene Length | 3495 bp |
|---|
| Protein Length | 1164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642725762 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_002016438 |
|---|
| Protein GI | 194334578 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.288159 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00472936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGTG AGTACCAGAA AGAACATTTC TATATAACCC GTGCGGCGCG ACAACATTGC
GCTTTAGGGG ATGAGCGGTT GCTTGAGCTT CCGGAGGACC GCAAAACGGC ATTCAAGCAG
GCTGAAGAGC AGACATCACG AATCAATGCC TGCCTTACCA AACAGTTTGG CGGGAGGGCT
CAGCTGCTTC TTCCGGCGCA GTTTTACGGG ATGAAGCTGC TGCACGCAGC GGCACATCTG
ATTCTGAGCC GGCTTGTGCT GCGGCGAACT CCTGACCTGC TGAAGCAGGC TGAAGCGAAA
GCTGAAGATG CGCTCGGCAA TACGGGAATG AGGGCTTATC TCTCAACCTT TGCCACAGAG
TTTCCCCCTT CGGAGCTCTT CCTCGGCAAA ACGACAAAGG AGCGCTTTCT TGAAGTTGGC
GTGAACCGCG AAATGGTGAT GGAGGAGTCG CTGCTGGTCT GGCTGCAGAA CCAGAACCCG
GCTCTGGACC AGTTCTCGTT TCTTATCAAC GATGAGGGCT TGAGAAGCGA ACGCTCGTAT
ACGACCGTGA TCACGACAAT CATGCAGTCA CTCAAGGCGA TCGGTCCGGT GGGACCCGGC
GGGGAGGACC CGGCGGAGCT TCTGACGATG CCGATGCGCC ATGCGCCGAA CTCGATCCTT
GCCCAGTTGC GCTACATGCG CCTGCACTGG GGCGAGATTC TGGCCGGCAC CCCGATCGAC
GAGATGCTTG AAGAGAGTAT CGGCATGATC GAGGATGAGG ACCGCTATAT CTTTTTTGAG
CAGGTTGGCC GCAGGGAGAT GCAGCAGCAT GGCGGATGGA TGGAGAAAAG CGTTCAGCCG
CCGTCGTTCA CCGATCTGGG CGATGCGCCT GAAAACTACT CCTCTGACCT GTCGTGGATG
CCGGAAGTGG TGATGCTGGC CAAGAGTACG TTTGTCTGGC TGGACCAGCT GAGCAAGAGC
TACCAGCGCC CTATCACCCG GCTGCAGGAT ATTCCCGACG AAGAGCTTGA CCGGATCGCC
GCTCGAGGCT TTACGGCCCT GTGGCTGATC GGCCTCTGGG AGCGGAGCCC GGCGTCGGAA
AACATCAAGC GGATGCAGGG CAACCCGGAA GCCAAGGCTT CGGCCTATGC GCTGGACCGT
TACGATATTG CAGGTGAAAT CGGCGGGCAC GAGGGGTACC TCGACCTGCA CCGTCGCGCC
ATGCAGCGCC ATATCCGCCT TGCGAGCGAT ATGGTGCCGA ACCATACGGG ACTGGATTCG
GAGCTGGTGA AGGAGAAACC GGAGTGGTTT GTCAGCACAC AGACCCCGCC CTACCCTAAC
TATACCTACA ACGGCCCCAA CCTGTCGAGC GATTCCCGGT ACGGCATCTA TATCGAAGAT
GGCTACTGGG ACCGGTCTGA TGCTGCAGTG ACCTTTCAGC GCGTTGATTT TCACAACGGC
GATACCCGCT ATATCTATCA TGGCAATGAT GGAACATCGA TGCCGTGGAA CGATACGGCG
CAGCTCAACT TTCTCAGCGC GGAGGTGCGC GAAGCGGTGA TCCAGCAGAT CCTGCATGTG
GCGCGTATGT TCCCGGTGAT CCGGTTCGAT GCGGCAATGG TGCTGGTGAA AAAGCATATC
CAGCGGTTGT GGTATCCCCT GCCGGGCCAC AGCGCGGCGG TGCCGTCGAG AAGCGGCAGC
GCGATGAGCA TGGAGGAGTT CAACAGGCTG ATTCCGGAGG AGTTCTGGCG CGAGGTGGTC
GACCGCATCC ACACCGAGGT GCCCGATACG CTCCTGCTTG CCGAGGCGTT CTGGATGCTT
GAAGGCTATT TTGTGCGCAC GCTGGGCATG CACCGCGTCT ATAACAGCGC GTTCATGCAC
ATGTTCAAGA AGGAGGATAA TGCGAGCTAT CGATATCTGA TCAAGAATAC GCTGGAGTAC
GATGCGCAGA TCCTGAAGCG CTACGTCAAC TTCATGAATA ACCCCGACGA GGATACCGCC
GTCGAACAGT TCGGCAAGGG CGACAAGTAT ATCGGGGTGT GCGTGATGAT GATCACCATG
CCCGGTCTGC CGATGTTCGG TCACGGTCAG GTGGAAGGGT TCAGTGAGAA GTACGGCATG
GAGTATGCCC GGGCCTACCT TGATGAACAG CCCGACCAGG AGCTTGTAGG GCGACACGAA
CGGGAGATTT TTCCGCTCCT GAAGAAACGC AGGCTCTTTG CGGAAGTTGA ACATTTCCAC
CTCTACGACG TCTACTCGCC GGATGGAGTG GTGAATGAAA ATGTTTTCTG CTATTCCAAC
CGCCTGGGCG ACGAACGCGC GCTGGTTGCG TTCAATAACA CGTGGGAGGA GACCACGGGG
TGGGTCAATA CCTCTGTCGG GTTCAAAACC CCGAACGGTA TCGAACAGCG CTCGCTCTGC
GACGGTCTCG GCCTGAGCCA CGATGAGGGA AGCTATGTCA TCTTCCGCGA TCACGTCAGC
GGCCTGGAGT TTATCCGCTC GATGGGAGAA CTGCGCCGGA ACGGGCTTCA CCTGGTACTC
GGCGGATACG GCTACAATGT CCTCTTCGGT TTCCGCGAAG TGCGCCCGAC GAAGCTTCGT
CCTTACGACC AGCTCGCTCT GGCGCTCAAC GGCAGCGGCG TGGAGGATAT GGAGACTGCT
GTGCTTGAAA TGAGCCTCGC TCCTCTGCAC GAACGGATCA CCGATTTCTG CTCCGAGCAC
ACCATCGACC GCCTGCTCGA CGAAGGGCTC AGCGACCGCG AACGGGTGAT GCTGATCCAG
GAGTCGCTCG AAGAGCTTCT GGCATACGCG TCTGAAGAGT TCGAGCTCCT GACCGATACC
CCGCTTGAGC TGCCGGACGG CGCCGCCGAG GATGCGGCCG CAACCTTCGC GCTCGTCATG
GAGCTTGGCG AGAACGTTCA GAAGTGCGGG ACCGATACGG CCTTTGCCGA AGGGCTCGGC
ATGCTGGACT GTGAGACGGC ACAGAATGCC TGCGGTGAAT TCGGCCATAT CGCCCTGCTG
TGGGTGATGC TCGAAGCACT GCAGCAGATG ATTGACGAAA ATGATCTCCT GGAGAAAAAC
GTGATCGACG ACTGGCTCCT GGCCAAACCG CTCAGAAAGG TGTTTACAAA AAACAAGCGC
CTTGCCAGCG CCCCGGTCGA AGAACTGCCC GACCTCTTCT GCTGGATGCT CACGCTGAAA
AAACCAGCCG CCTCGATACG CAAACCGCTT CGCTACCTGC GTGAGGTGCT GGAAGAGGAA
ACAGAAGAAA ACGGATCGCA CACCGCACGT TTTCTGCAGA TGCAGGAACT CTACAGAAAA
CAGTGGTTCC GGCAAAACCG CTTCGCACGC CTCTGCGCAT GGACTGCAAC GATCGCCCTC
CTGAACAGCG AAGAAGGCAT CGCAGCAACC GAACTTGAAC CATGGATCGA CGCCCTCAAC
GAACTGCGCG ACGAAGCCTT TCTTGCCGGA TATGAAGTCC ATGCGCTTCG TGCGCTTGCG
CCTGCTGCGC GGTGA
|
|---|
| Protein sequence | MAGEYQKEHF YITRAARQHC ALGDERLLEL PEDRKTAFKQ AEEQTSRINA CLTKQFGGRA
QLLLPAQFYG MKLLHAAAHL ILSRLVLRRT PDLLKQAEAK AEDALGNTGM RAYLSTFATE
FPPSELFLGK TTKERFLEVG VNREMVMEES LLVWLQNQNP ALDQFSFLIN DEGLRSERSY
TTVITTIMQS LKAIGPVGPG GEDPAELLTM PMRHAPNSIL AQLRYMRLHW GEILAGTPID
EMLEESIGMI EDEDRYIFFE QVGRREMQQH GGWMEKSVQP PSFTDLGDAP ENYSSDLSWM
PEVVMLAKST FVWLDQLSKS YQRPITRLQD IPDEELDRIA ARGFTALWLI GLWERSPASE
NIKRMQGNPE AKASAYALDR YDIAGEIGGH EGYLDLHRRA MQRHIRLASD MVPNHTGLDS
ELVKEKPEWF VSTQTPPYPN YTYNGPNLSS DSRYGIYIED GYWDRSDAAV TFQRVDFHNG
DTRYIYHGND GTSMPWNDTA QLNFLSAEVR EAVIQQILHV ARMFPVIRFD AAMVLVKKHI
QRLWYPLPGH SAAVPSRSGS AMSMEEFNRL IPEEFWREVV DRIHTEVPDT LLLAEAFWML
EGYFVRTLGM HRVYNSAFMH MFKKEDNASY RYLIKNTLEY DAQILKRYVN FMNNPDEDTA
VEQFGKGDKY IGVCVMMITM PGLPMFGHGQ VEGFSEKYGM EYARAYLDEQ PDQELVGRHE
REIFPLLKKR RLFAEVEHFH LYDVYSPDGV VNENVFCYSN RLGDERALVA FNNTWEETTG
WVNTSVGFKT PNGIEQRSLC DGLGLSHDEG SYVIFRDHVS GLEFIRSMGE LRRNGLHLVL
GGYGYNVLFG FREVRPTKLR PYDQLALALN GSGVEDMETA VLEMSLAPLH ERITDFCSEH
TIDRLLDEGL SDRERVMLIQ ESLEELLAYA SEEFELLTDT PLELPDGAAE DAAATFALVM
ELGENVQKCG TDTAFAEGLG MLDCETAQNA CGEFGHIALL WVMLEALQQM IDENDLLEKN
VIDDWLLAKP LRKVFTKNKR LASAPVEELP DLFCWMLTLK KPAASIRKPL RYLREVLEEE
TEENGSHTAR FLQMQELYRK QWFRQNRFAR LCAWTATIAL LNSEEGIAAT ELEPWIDALN
ELRDEAFLAG YEVHALRALA PAAR
|
|---|
| |