| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_1625 |
|---|
| Symbol | |
|---|
| ID | 6458762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | + |
|---|
| Start bp | 1768398 |
|---|
| End bp | 1770032 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642725613 |
|---|
| Product | transcriptional regulator, NifA subfamily, Fis Family |
|---|
| Protein accession | YP_002016290 |
|---|
| Protein GI | 194334430 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0165781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATAA TAAAAACCCC AGCTGTCGAG CAACCCAATA CGATGACGCT TCTTGCTGAA
GTCAGCCGGG CACTGAATCA TGAAGAGGAT ATTAATACCG TGTTGCGCCG GGTGCTGAGC
ATCATGTCGG AACATATGGA GATGATGAGG GGAATGATCA CCATTCTCAA TCGCGATACC
GATGAAATCG TCATCAATGA ATCATTCGGT CTTACGGAAG AAGAACAGGC AAGAGGACGC
TATAAGCCAG GCGAAGGAAT TATCGGCCAG GTTGTCAAAA CAGGCAAACA CATCGTCGTA
CCAAGAATCG ACGAAGAACC TCTCTTTCTT AATCGCACAG GATCAAGAAA CAGGATCAAA
AGCGATCACC TCAGCTTCGC CTGCGTACCT GTCACATCCG GAAATGAAGT TATAGGCACC
CTGAGCGCTG ACCGCTCAAC CCTTGTCGAA GAAAAAGAGA ATGGCAAAAC GCTCCAGGAG
CGTGAGGATG AGAGCATCGA CGAACTGGTT AACATTCTCT CCATCATCGC ATCGATGATC
TCTCAGGCAG TCCGGCTGAA ACAGCTGGCA CAGGAGGAGT CCGGAAACCG CCAGAACACA
GCCTATGGCC AGACAGGAGA AGCCTTCTCC TACTATCGCG ACGACAGTCA CTTCAGCGAA
GAAGAGTATG CCACCGCCAA AAGACCGGCA AACATCATCG GCAACTCCAA AGCGATGCTT
TCGGTATTCC GCATGATCGA CAAAATATCA CCCACCAACG CCACCGCCCT TATCCTCGGG
GAAAGCGGTG TAGGAAAAGA ACTTGTCGCC AGCGCAATTC ACTACAAAAG CCACCGCTCA
GACAAACCGT TTATCAAATT CAACTGCGCA GCCCTTCCTG AAAGCATCGT CGAAAGTGAA
CTCTTCGGTC ATGAGAAAGG TTCCTTTACC GGCGCAACCG CAACTCGTCA GGGACGTTTC
GAGCTTGCTG ACGGCGGGAC CATATTCCTC GACGAAATCG GCGAACTCAG CCTCCCCATT
CAGGCAAAGC TGCTTCGGAT CCTTCAGGAA AAAGAGTTTG AACGGGTTGG CGGGTCCAAA
ACCCTCAAAA CCGATATCCG GGTCATTGCC GCGACCAATC GCGACCTTGA AGAAGAGATC
AAAAAAGAAC GATTCAGGGA AGACCTCTAC TACCGCCTGA ATATTTTTCC CATTACCGTC
CCCGCTCTTC GTGAACGGAA ATCTGATATT CTTCTGCTTG CCGACTACTT CGTTGACAAA
TACAACACCG TCAACTTCAA AGGAGTGCGA AGAATTTCAA CCAGAGCCAT CGACATGCTG
ATGCGCTACC ACTGGCCAGG CAATGTCAGA GAGCTGGAAA ACTGTATCGA AAGAGCTGTG
ATCCTCAGTG AAGACAACGT CATTCACGGC TACCACCTGC CGCCAACCCT GCAGACCGCT
GAATCAAGCG GAACTCCGGC AACAGGGTCT CTCCAGCAAC GGCTTGATGC CATCGAGCAT
GACATGATTA TCGAAGCCCT CAAGCGCACC AAGGGAAATA TGTCTAAAGC ATCCCGACAA
CTCGGGCTGA GCGAACGGGT CATGGGACTG AGAGTCAAAA AATTCTCTAT TGATTTCCGT
AAATACCGAC CCTGA
|
|---|
| Protein sequence | MQIIKTPAVE QPNTMTLLAE VSRALNHEED INTVLRRVLS IMSEHMEMMR GMITILNRDT
DEIVINESFG LTEEEQARGR YKPGEGIIGQ VVKTGKHIVV PRIDEEPLFL NRTGSRNRIK
SDHLSFACVP VTSGNEVIGT LSADRSTLVE EKENGKTLQE REDESIDELV NILSIIASMI
SQAVRLKQLA QEESGNRQNT AYGQTGEAFS YYRDDSHFSE EEYATAKRPA NIIGNSKAML
SVFRMIDKIS PTNATALILG ESGVGKELVA SAIHYKSHRS DKPFIKFNCA ALPESIVESE
LFGHEKGSFT GATATRQGRF ELADGGTIFL DEIGELSLPI QAKLLRILQE KEFERVGGSK
TLKTDIRVIA ATNRDLEEEI KKERFREDLY YRLNIFPITV PALRERKSDI LLLADYFVDK
YNTVNFKGVR RISTRAIDML MRYHWPGNVR ELENCIERAV ILSEDNVIHG YHLPPTLQTA
ESSGTPATGS LQQRLDAIEH DMIIEALKRT KGNMSKASRQ LGLSERVMGL RVKKFSIDFR
KYRP
|
|---|
| |