Gene Paes_1354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_1354 
Symbol 
ID6458720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp1473636 
End bp1475621 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content49% 
IMG OID642725338 
ProductLytic transglycosylase catalytic 
Protein accessionYP_002016023 
Protein GI194334163 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.828484 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0280405 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCAAC GAACTTCTTT TTCAGCACTT ACACTCTTAT TCTGCCTGCT GATTGCGACA 
ATGCTGCAGC CAGGAAGGGC GTATGCAGCC CGTTCTCAGG ATGATCAGGC TGTTGCGGCT
GTACTGGACA GCCTGGTTGC TGCGACTTAT TTTGATGATA GTCATTTCCG GCAATGGAAA
GATGATGTGC CGAATGGCTT TTCTCCGACC TTTATTCCCC AGTTCGATGA TGAGACATAT
GCAGAAAGGA TAGCTGAACT CAACCGCAGA ACGCCCATAA GACTGACCTA CAACGAGCAT
GTAAAAAATT TTATAAAATT GTATGCCGTT GACAAACGGG TGATGACAGC AAAGATTCTT
GGTTTGACCA AAACCTATTT TCCCCTTTTT GAGCAAAAGC TGCGCGAATA CAATATGCCT
ACCGAGCTGA AATATCTTGC CATTGTCGAA TCGGCACTCA ACCCTGTTGC GGTATCGAGT
GCCAATGCAA AAGGGCTGTG GCAGTTTATT TACGGTACAG GCAAAATGTA TGGTTTGAAG
TCCACCTCAT TTGTCGAGGA TCGATTTGAT CCCTATAAGG CGACTGTTGC CGCGTGTGAA
CACATGACGG ATCTGTATGA TATCTATGGC GACTGGTTTC TTGTGCTCGC GGCATACAAT
GCCGGTGCCG GTAACGTCAA TAAGGCTATC AGGCGATCAG GAGGACGGAG GGATTACTGG
GGGATATGGT CGAAGCTTCC TTCGGAGACA CGGAGTTATG TTCCGGCATT CATTGCGGTG
ACCTATGTGA TGAATTATTA CAAGGAACAC AATATCATTC CTGAAGAACC GGGGTATCTC
TATGAGAATA TCGCAACGGT CAATGTCTCT GATGTTCTGG CTTTTGACCA GATCCACGAA
GTGCTCGGTA TTCCTCTCCA GGACCTTGAG TTTCTCAACC CGCAGTACAA GCGGGGGGTT
ATTCCCGTTA TTGGCCCGGC ACCGCTTTCG CTGCGTCTTC CAGACCATTA TGTGGATGAT
TTTAATCGTA AGGAAAAAGA GCTTTACGTG CATAAATCAC AATCAGGGAT TGACCGCGCT
CAGCTTTTGG CTTCTGTCAA AGAGGGGGGG AAAGAGAGAA AAATTCATCG GGTGAGACGT
GGCGAAACGC TTGCATCAAT TGCCAGAATG CATCGTTGTT ATGTCAGTCA GTTGATCAAA
TGGAACAATC TTCGCAACTC GCGTATCTAT CCCGGTCAGA AACTCTCTGT ATTCGGCGCT
CCTGAAACCA TCCGCAGGTC TTCGAAGCCG TCTTCGGCAC CGTCGATAGT CTACCATAAA
GTTCGAAAGG GAGAGTCGCT TATCAGGATT GCCAAGCGCT ACAAGGTAAG CGTCAGCAAT
CTCGCCTCAT GGAACAATCT TGGTCGGCGC CGCACCATCT ATGCTGGTCA GAAGCTTAAA
ATATATGGCC GTGGTTCAGG TTCGACGTCG TCCTCTTCCA GCGTGTCGCA AACCCATATT
GTCCGTCGTG GAGAGACCCT TGGAGCGATT GCCAAGCGCT ACAAGGTCAG CGTCAGCAAT
ATCGCTTCAT GGAACAGTCT CGGTCGGCGC CGTACTATCT ATCCGGGTCA GAAGCTCAAA
ATATATGGCC GTGGTTCAGG TTCGACGTCG TCTTCTTCCA GCGTGTCGCA AACCCATATT
GTCCGTCGTG GAGAAACCCT TGGAGCGATT GCCAAGCGCT ACAAGGTGAG CGTCAGCAAT
ATCGCTTCAT GGAACAGTCT CGGTCGGCGC CGCACTATCT ATCCGGGTCA GAAACTCAAA
ATAAACGGCA GGACATCAGG TTCGACGTCA GGAGCAGCCA GGACGTATAT TGTTAAACGG
GGCGATACGC TGGGCGCGAT CGCGAGTCGC TACAAGGTGA GCGTCAGCAA GATTGTCTCC
TGGAATAATC TGGGAAAGCG TCGCCTTATC TATCCAGGTC AGAAACTGAA AGTTTCTTCA
CATTAA
 
Protein sequence
MSQRTSFSAL TLLFCLLIAT MLQPGRAYAA RSQDDQAVAA VLDSLVAATY FDDSHFRQWK 
DDVPNGFSPT FIPQFDDETY AERIAELNRR TPIRLTYNEH VKNFIKLYAV DKRVMTAKIL
GLTKTYFPLF EQKLREYNMP TELKYLAIVE SALNPVAVSS ANAKGLWQFI YGTGKMYGLK
STSFVEDRFD PYKATVAACE HMTDLYDIYG DWFLVLAAYN AGAGNVNKAI RRSGGRRDYW
GIWSKLPSET RSYVPAFIAV TYVMNYYKEH NIIPEEPGYL YENIATVNVS DVLAFDQIHE
VLGIPLQDLE FLNPQYKRGV IPVIGPAPLS LRLPDHYVDD FNRKEKELYV HKSQSGIDRA
QLLASVKEGG KERKIHRVRR GETLASIARM HRCYVSQLIK WNNLRNSRIY PGQKLSVFGA
PETIRRSSKP SSAPSIVYHK VRKGESLIRI AKRYKVSVSN LASWNNLGRR RTIYAGQKLK
IYGRGSGSTS SSSSVSQTHI VRRGETLGAI AKRYKVSVSN IASWNSLGRR RTIYPGQKLK
IYGRGSGSTS SSSSVSQTHI VRRGETLGAI AKRYKVSVSN IASWNSLGRR RTIYPGQKLK
INGRTSGSTS GAARTYIVKR GDTLGAIASR YKVSVSKIVS WNNLGKRRLI YPGQKLKVSS
H