Gene Paes_1228 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_1228 
Symbol 
ID6460234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp1335207 
End bp1335938 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content47% 
IMG OID642725216 
Producttwo component transcriptional regulator, winged helix family 
Protein accessionYP_002015901 
Protein GI194334041 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.33811e-11 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0161608 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTACCT CAATATTTTC TTCTGTACAC AATAAGCAAA AGGTTATACT GATTGGCGAT 
GAACAGAATT CGCGTCAATC TCTCCAGCTT TTCCTCACTG GACAGGGATT CGATATCAGG
TCCATAGGCG ATGAACAGAA ATTCCTTGAC GAGATTAACT CCACCGCGTA TGAGGTCGCC
ATCCTCGACT GCACCCATTC CAATACGGAC GATGTTGCCC TTACACGCTA CCTTCGGACT
CACACACCAA TGCGTATTAT TATTCTGTCA AACCGCCTCT CCAGCCATGG TCCTGTAGAA
GGGTACCTGT CCGGAGCTGA CCTGTATATA GAGAAACCCG TTGACTTTCC TGTTCTTGCC
GCGGCGCTCA ATAGCATGTT GGAGCGGTGT TCAGAATCAC AGAGGTTTCA TGATACATGC
GCCATAAAAT CCCTTCATGC ATGGATTCTC TGTAAAGCCA ACAGAGAACT GATTGCTCCA
GACAAAACAA GGATTTCTCT CACGACAAAG GAGTACCTGT TTCTTAGCCG CCTGGCAAAC
GCAACCTCCG ACGTGGTTAC ACGAACAGAT TTACTCGATA TCCTGGGTTA TGAGCAGAAT
GAATACGGTC ATAAGCGGCT GGAAACCCTG GTCTATCGCA TCCGAAGAAA AAGCAGGCAG
ACTGAGTTCT TCCCGCTGAT CACACACCAT GGTTGCGGCT ATTCATTTTC GACAGGTCTG
ATTGCGGTAT AA
 
Protein sequence
MSTSIFSSVH NKQKVILIGD EQNSRQSLQL FLTGQGFDIR SIGDEQKFLD EINSTAYEVA 
ILDCTHSNTD DVALTRYLRT HTPMRIIILS NRLSSHGPVE GYLSGADLYI EKPVDFPVLA
AALNSMLERC SESQRFHDTC AIKSLHAWIL CKANRELIAP DKTRISLTTK EYLFLSRLAN
ATSDVVTRTD LLDILGYEQN EYGHKRLETL VYRIRRKSRQ TEFFPLITHH GCGYSFSTGL
IAV