| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0766 |
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| Symbol | |
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| ID | 6459190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prosthecochloris aestuarii DSM 271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011059 |
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| Strand | - |
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| Start bp | 814648 |
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| End bp | 818010 |
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| Gene Length | 3363 bp |
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| Protein Length | 1120 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642724763 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002015460 |
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| Protein GI | 194333600 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTGCA GATTATTTAT GAAAACTTCA GGAAACCAAA GTACAGAGAT AAACGCATCA
GTAACAAAAA GACCCCTCTC TTTTCTCCGA AAAGCGTTAC AATTTTCCTC TTCCTATGCA
ACACTGAAAA GCCGTCTGGA ACAATCATTG ATCGACAAAG ACAAAAGCTC AATCGATATT
TCCGGTCTCC AGGGCTCTCT GTCATCTCTT CTCGTTGCCG CACTTGTCGA AGATCTGCAA
CGGCCGGTCA TGGTCATCTG CAACCAGGAT ATTTTTGATC TTTACGATAA TGATTTCACT
CTTTTGATCG ATCCTGCATC GTATCATACC GCTGCCGATG AACTTTCAGC CGCCCTCAGC
ACCCTGGCAG AACACCGCAA TGCCCTTATC CTTGCAGATT TCGATGATCT GAAAATCAGG
CTTCAGAACC CCGATGGTGC ATCGGATAAA ATATTTCCAC TCCAGAACAA CAGCGATGCC
GGTTACAACA AACTGATTGA TTTCCTCTCA CGCAACAATT TCAACCGGAA GGATTTTGTT
GACGCGGAAG GGGAATTCTC AACCAGAGGA TCGATCATCG ATATTTTCCC GTTCGGGGCC
AGAGAGCCGC TGCGCATAGA ATTTTTTGGC GACACCATCA CCTCCATCCG CTCTTTCGAC
ACCAACAGCC AGTTATCGAA AACATCGGTA CAGACGGTTG AGCTGACCGG AAATTTCCTG
CTTGAGCCAC AAAGCGATGA AGATCGTTCA TGGAGCATCT TCGATTATCT TCCAGCCTCG
ACCATCATTG TTATCGACGA TGCTGCAAGC CTTTCTGCCG CTGAAAACCT CGATGATGCA
AAAAAGAAAC TCGCGGGACT GCAAAGGGTT CAGATTCACC GGCTGATACA ACAGGAGATT
GAGTTCGGCT CGTTGCCCCA GCAACAGCTT CAGGCTAACT TCACCCTTTT TGCCAGAGAA
CTTGCAACAA AAACAGCGCA GGATCTGCAA ACCGTTTTTA TCGGAAGTTC GAAAAAAGAG
ATTGAAGAGC TGGCTGAATT CATTGCAGAG GAAAAAGTTG TGATTGAAAG TCGCGCACTG
GTCGAAATAA ACTGGATCGC GGCAAACCTG TATTCCGGCT TCCGTTTCAA CGGCTATGAT
GTCTACAGCG AGTCAGACAT CTTCGGAAAG CTTCATACCC ATAAACAGCA CAGAAAAAAA
GCTGTCAAAG GCATTTCGCT CAAGGACCTT CATCGCCTCA ACGTCGGAGA TCATATCGTT
CACGAAGATT ACGGCATCGG CATCTTCAAA GCGCTCGAAA CCATTCAGGT CGGAAACTCA
GAACAGGAGT GCGTTCTTGT CGAATACGAC AAAGGCGACC AGCTCTATGT CAATGTCCAG
AATATCGGAC TGCTCTCGAA ATACAGCGCA GCCGAAGGCT CGCTCCCCTC TCTGTCCCGC
CTTGGAAGCT CCAAATGGAA AGCAAGAAAA GATAAAGTCA AAAAACGCCT TAGAGATATA
GCCTCTGAAC TCATCAAGCT TTACGCAAAA AGAAAGATGA CTCCCGGTTT TGCATTCGGA
CAGGATTCTA TTTTTCAACG TGAGTTCGAG GCATCATTCA TTTTTGACGA AACACCCGAC
CAGCTCAAAG CTATAGAAGA GGTCAAAAAA GATATGCAAT CGCCCTTCCC CATGGACCGC
CTCATCTGCG GCGATGCCGG TTTCGGCAAG ACCGAAATAG CCATGCGCGC AGCCTTCAAG
GCTGTTGAAT CCAGTAAACA GGTCGCTGTC CTCACCCCGA CGACCATTCT CGCTCACCAG
CACATGGAGA CCTTCACCAG AAGGTTTGAA AATTTCCCCG TCAATATTGC TGTCCTGAGC
CGCTTTGTCT CGAAAAGTGA CCAGAAAAAA ATCGTCCATG ACCTTTCCAA AGGGCTGATT
GATATTGTTA TCGGCACCCA CAGGCTTGTC TCGAAAGATG TGGTATTTCA GGATCTTGGT
CTCCTGGTTA TCGATGAAGA GCAGCATTTC GGTGTCAGCG TCAAAGAAAA GCTTCGCCAG
ACATTTCCCT CTGTTGACAC CCTGACCATG TCGGCAACGC CGATCCCGAG AACACTCCAG
TTTTCAATGC TGGGAGCACG CGACCTTTCG ATTGTCTCAA CTCCACCGAA AAACCGTCAG
CCGGTAGAAA CCATGATCAC AACGTTCGAT ACCGATCTTT TGCAATCGGC GATCCGAACA
GAAATCAACA GGAAAGGACA GGTTTTCGTG CTTCACAACA GGATTGCCGG ACTCGAAGAG
ATGAAGCAAA CTCTGCAGGA GCTTGTTCCA GGAGTACGGA TGGCATATGC GCACGGTCAG
ATGCCGACGG CCGAGCTGGA AAACATTATG ATGGATTTCA TCACTCACGA ACTCGACGTC
CTTATCTCCA CCTCGATTAT CGGCTCAGGT CTCGATATTT CAAATGCCAA TACGATTATC
ATCAACCGTG CTGATATGTT CGGGCTCTCA GACCTCTACC AGTTGAGAGG ACGAGTCGGT
CGCAGTGACA GAAAAGCATA CAGCTACCTC ATCACGCCCC CCATCCAGAC CCTTAAACAG
GATGCGATAC AAAGACTGGC AGTCATCGAA AGCTTTACCG AACTCGGTTC GGGCTTTAAC
ATTGCCATGC GAGACCTTGA TATCAGGGGC GCAGGAAACC TGCTCGGATC AGAACAGTCA
GGAGCAATCC ATGAACTCGG CTTCAACCTC TACCAGAAAC TGCTTGAAGA GGCGGTTGCC
GAACTGAAAA CAGGCGCTTT CAGCTCGCTC TTTTCTGACA ATGATCAATC AACGATCCGC
GAAAAGCACC ATTGCGATAT GAGCTTCTTT TTCGACGCCC TTATTCCGGA CTATTATGTC
TCATCAGCAC AGGAACGCTT CATGTTTTAC GAAAAAATCT CGAAGGCCTT GAACAACGAG
ACGCTCAAGC GTCTGGAAGA TGAGTTGCAG GACCGCTTCG GAGCACTTCC GCAGGATGTA
GAAAACCTTC TGGGGCTTGC CAGATTACAA GCACTATGTA GCTCCTTGGG CCTCGCCAAA
GTCGATCTGC AACACAACAG CGCAACACTG ACGCTTCCAC CACAGGATCA TGACGAGTTC
TATAACGGAA CATTTTTCCA TACCCTCCTC GCTTCAGTTC AGGACCCCTG GATGCAGATA
TACAAACCGC GCTTCAGTCA GGAGAAGCGA ATGAAGCTTG TGCTGCAACA CCCTGAAACA
ACAGCAGGTA ACCCTGAAAA AATACTTGCC GCATACACGT CCCTGCTGCT ACAGCTTCAG
CAAATCCCTG AAACACAAGC GACTGAAAAC AGTAACCGGA AAGCCGCAGA GCTTCAACCA
TGA
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| Protein sequence | MLCRLFMKTS GNQSTEINAS VTKRPLSFLR KALQFSSSYA TLKSRLEQSL IDKDKSSIDI
SGLQGSLSSL LVAALVEDLQ RPVMVICNQD IFDLYDNDFT LLIDPASYHT AADELSAALS
TLAEHRNALI LADFDDLKIR LQNPDGASDK IFPLQNNSDA GYNKLIDFLS RNNFNRKDFV
DAEGEFSTRG SIIDIFPFGA REPLRIEFFG DTITSIRSFD TNSQLSKTSV QTVELTGNFL
LEPQSDEDRS WSIFDYLPAS TIIVIDDAAS LSAAENLDDA KKKLAGLQRV QIHRLIQQEI
EFGSLPQQQL QANFTLFARE LATKTAQDLQ TVFIGSSKKE IEELAEFIAE EKVVIESRAL
VEINWIAANL YSGFRFNGYD VYSESDIFGK LHTHKQHRKK AVKGISLKDL HRLNVGDHIV
HEDYGIGIFK ALETIQVGNS EQECVLVEYD KGDQLYVNVQ NIGLLSKYSA AEGSLPSLSR
LGSSKWKARK DKVKKRLRDI ASELIKLYAK RKMTPGFAFG QDSIFQREFE ASFIFDETPD
QLKAIEEVKK DMQSPFPMDR LICGDAGFGK TEIAMRAAFK AVESSKQVAV LTPTTILAHQ
HMETFTRRFE NFPVNIAVLS RFVSKSDQKK IVHDLSKGLI DIVIGTHRLV SKDVVFQDLG
LLVIDEEQHF GVSVKEKLRQ TFPSVDTLTM SATPIPRTLQ FSMLGARDLS IVSTPPKNRQ
PVETMITTFD TDLLQSAIRT EINRKGQVFV LHNRIAGLEE MKQTLQELVP GVRMAYAHGQ
MPTAELENIM MDFITHELDV LISTSIIGSG LDISNANTII INRADMFGLS DLYQLRGRVG
RSDRKAYSYL ITPPIQTLKQ DAIQRLAVIE SFTELGSGFN IAMRDLDIRG AGNLLGSEQS
GAIHELGFNL YQKLLEEAVA ELKTGAFSSL FSDNDQSTIR EKHHCDMSFF FDALIPDYYV
SSAQERFMFY EKISKALNNE TLKRLEDELQ DRFGALPQDV ENLLGLARLQ ALCSSLGLAK
VDLQHNSATL TLPPQDHDEF YNGTFFHTLL ASVQDPWMQI YKPRFSQEKR MKLVLQHPET
TAGNPEKILA AYTSLLLQLQ QIPETQATEN SNRKAAELQP
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