| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0716 |
|---|
| Symbol | |
|---|
| ID | 6458682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | + |
|---|
| Start bp | 761592 |
|---|
| End bp | 765062 |
|---|
| Gene Length | 3471 bp |
|---|
| Protein Length | 1156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642724713 |
|---|
| Product | ribonucleotide-diphosphate reductase subunit alpha |
|---|
| Protein accession | YP_002015410 |
|---|
| Protein GI | 194333550 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00503093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTT CCCGCCGTTT TACTCTGAAG GATAGCGACG TGTATGAGAA GTTTGAGTAC
ACCCGACGGA CGTCCGTGCT TCGCAACCCT GATGGTTCAA AGGTGTTTGA AATGAATGAT
ATCGAGGTGC CGAAAGAGTG GTCTCAGGTG GCAACTGATA TTCTCGCCCA GAAATATTTT
CGTAAAACCG GCGTGCCCCA GCGTAATGCG AAAGGGGAGA TTATCCGGGA TAAAAAAGGT
AATCCTGTTA CCGGAAGCGA AAATTCCATC AGGCAGGTGG CTCATCGTCT CGTCGGTTGT
TGGAAAGACT GGGGGGAAAA GCACAACTAT TTCGACTCTC CCGATGATGC GAAGGCGTTT
TACGACGAGG TGGTTTTTAT GCTGATGAAG CAGATGGCTG CTCCGAACTC GCCACAATGG
TTCAATACCG GTTTGCATTA CGCCTATGGC ATCAGCGGTC CTGCTCAGGG GCATTTTCAT
GTCGACCCGG AGACCGATAA GGTGTGTGAG TCCACTGACG CATACAGCCG ACCGCAGGCT
CACGCCTGCT TTATCCAGTC GGTCAATGAC GACCTTGTCA ACGATGGAGG TATTTTCGAT
CTTGCTATCC GTGAGGCGAG GGTTTTCAAG TTCGGCAGCG GTTCAGGCAC GAACTTTTCG
AATCTGCGTT CCCGCGGTGA AAAACTCAGC GGAGGCGGAA CCTCTTCGGG TTTGATGAGT
TTCCTCAAGA TTTTCGATTC AGCAGCGGGA GCGATTAAAT CAGGAGGCAC AACGCGTCGT
GCGGCCAAGA TGGTCATTGT CGATATCGAT CATCCCGATA TCGAGGAGTT CATCGAGTGG
AAATCACGCG AAGAGGACAA GGTCGCCTCT CTTGTTTCCG GTTCGAGGGT CTGTTCGAAA
TTTCTTAAAG CGATTGTTGA CGAGGCGGTC AGTAACGGGA CCGACCGGAT GACCAATCCG
AAACTCAATA CGCTTGTTGT CAATGCTCTG GGCCGTGGCG TGCCGATGAG TTATATCGTC
AGGGTGATCT CTCTGGTAGA ACAGGGTTAT ACAACCCTTG ATTTTGACGA GTACACGACC
CATTATGAAT CGGAAGCCTA CCAGACCGTC AGCGGTCAGA ACTCAAACAA TACGGTTCGT
GTGACCAATG AGTTCATGAA GGCTGTCGAG AATGATGATC TCTGGGTGCT CAGGGAAAGG
ACAACGGGCA AGAGTGCCCG ATCGGTCAGA GCAAGGGATT TGTGGGAAAA AATTGTGATG
AGCGCATGGA AGTGTGCCGA TCCCGGTCTG CAGTTCGATA CGACGATCAA TGAGTGGCAT
ACCTGTCCTG CAAGCGGGAG GATCAACGGC AGCAATCCAT GCTCTGAATA CATGTTCCTC
GACGATACAG CCTGCAATCT GGCCAGTCTC AATCTGGCTC ATTTTCTTGA TGTCGAAAAA
GGCGAGATCA AGGTTGATGA TCTGCTTCAT GCGACAAGAC TGTGGACTAT CGTTCTCGAA
ATTTCCGTGC TGATGGCTCA TTTCCCGTCA GAGGATATCG CACGTCTGAG CTATGAGTTC
AGAACCCTCG GGCTTGGATT TGCCAATCTC GGGACTATTC TCATGGTTAT GGGTATTCCC
TATGATTCGC CCAAGGCGTT GGCTATTGCC GGTGCCATAT CGGCTCTTAT TACAGGCGGA
GCGTACCGTG CGTCAGCTGA AATGGCTGCC GACCTTGGCC CTTATGCGCG TTTTCGTGAA
AATGAAAAAG ATATGCTGAG GGTTATTCGC AATCATCGGC GTGCAGCTCA TAATCTGAGT
GAGGATGAAT ATGAGAATCT TCTTGTCAAA CCGCGCGGTA TTGACTCGGA ATACTGTCCC
GGCTATCTTT TCAAGGCGGT TGGCAGTGTT TGGGACGATG CTCTTGCCAA AGGCGAGAAA
GACGGTTTTC GCAACGCTCA GGTCAGCGTG ATCGCGCCTA CGGGAACGAT AGGCCTGGTT
ATGGATTGCG ATACGACCGG TATCGAGCCG GAGTTTGCTA TCGTGAAATT TAAAAAACTT
GCCGGCGGGG GATACTTCAA AATTGTCAAC CAGTCGGTAC ACAAAGCGCT TAAGCGTCTT
GGCTACAGCG ATACCGATAT AGATGAGATC GAGAAGTATT GCAAAGGTTA CGGGACTTTT
GTGGGCTGTC CTACGATCAG CCACCAGTGG CTTGTGAGCA AGGGGTTCAC CGACGACAAG
ATCGAGGCGG TCGAGGCCCA GCTTTCAAAT GTTTTCGATA TCCGTTTTGC TTTCAATAAA
TGGATTCTCG GCGATGAGTT CTGCCATTCG CTCGGATTCA GCGAAGAGCA GCTCAATGAT
CCTCACTTCA ACATGCTTGA AGCGCTTGGC GCTTCGTCTG AAGATGCCCG GGCAGCCAAT
GATTACGTGT GCGGTACTAT GACTATCGAG GGTGCGCCGC ACCTTCGTCT TGAACACCTG
CCGGTGTTCG ACTGTGCCGG AACATGCGGC CTCAAGGGGG TACGCTATAT CAAGCCTATG
GCTCATGTAC GTATGATGTC GGCTGTTCAG CCGTTCGTAT CGGGCGCGAT ATCCAAAACT
GTCAATATGC CGCCGACGGC TACGGTCGAG GAGATCAGTG ACGTCTACCT CACGGCATGG
CAGTCTATGG TCAAGGCTAT CACTATTTAT CGTGATGGTT CAAAACTTTC TCAGCCGCTC
AGCAACAGCA GTTATCAGGA CCTTGATGAA GTGATTATGC TGGGTACAGA AGATGATCTC
GATGAAACTC TGGGTCCGAA AGAGGTGCAG GAGCGTATTG TCGAGAAGGT CTATCACCGT
TCCGACCGCA GGCTGTTGCC GAAGAGGCGA AAAGGCTATA TCCGCGAAGC GTATGTCGGC
GGTCATAAGG TGTTTCTTCG CACAGGTGAA TATGAGGACG GTTCTCTTGG CGAGGTGTTT
ATCGACATGT ACAAGGAGGG GGCTTCATTT AAGGGGCTTC TGAACTGTTT TGCTGTGCTT
TCCTCAAAAG CGCTCCAGTA CGGGATGCCT CTCGAGGAAC TGGTCGACAG TTTTACCTTC
ACGCGCTTTG AGCCGGCAGG TATGGTGCAG GGGCATAATG TCATTAAAAA TGCCACATCG
ATTCTTGATT ATGTTTTTCG TTCGATAGGC TATGATTATC TCGGCCGCAA GGATTTTGTT
CATGTTAAGG CAGTTGATGA GATTTCGCAT GGAGAGAAGG CTGAAAAAGC TGAAAACCCT
TCAGCTAACG GCCATGATCC CGCCGGGGTC AACACCGTTG TTGAAACGAC AAAAAAGGCG
GCAGCTCATG CCGGCCACGA GCATGGCGGG GTGGCTGATT CACAGATTAT GCAGGCCAGA
GTTCAGGGCT ATTCAGGTGA GCAGTGTGAA AACTGCGGTT CGGTCAGGGT CAAGCAGAAC
GGTACCTGCA AGGTGTGCGA GGATTGCGGT ATGACGACTG GTTGTTCCTG A
|
|---|
| Protein sequence | MKISRRFTLK DSDVYEKFEY TRRTSVLRNP DGSKVFEMND IEVPKEWSQV ATDILAQKYF
RKTGVPQRNA KGEIIRDKKG NPVTGSENSI RQVAHRLVGC WKDWGEKHNY FDSPDDAKAF
YDEVVFMLMK QMAAPNSPQW FNTGLHYAYG ISGPAQGHFH VDPETDKVCE STDAYSRPQA
HACFIQSVND DLVNDGGIFD LAIREARVFK FGSGSGTNFS NLRSRGEKLS GGGTSSGLMS
FLKIFDSAAG AIKSGGTTRR AAKMVIVDID HPDIEEFIEW KSREEDKVAS LVSGSRVCSK
FLKAIVDEAV SNGTDRMTNP KLNTLVVNAL GRGVPMSYIV RVISLVEQGY TTLDFDEYTT
HYESEAYQTV SGQNSNNTVR VTNEFMKAVE NDDLWVLRER TTGKSARSVR ARDLWEKIVM
SAWKCADPGL QFDTTINEWH TCPASGRING SNPCSEYMFL DDTACNLASL NLAHFLDVEK
GEIKVDDLLH ATRLWTIVLE ISVLMAHFPS EDIARLSYEF RTLGLGFANL GTILMVMGIP
YDSPKALAIA GAISALITGG AYRASAEMAA DLGPYARFRE NEKDMLRVIR NHRRAAHNLS
EDEYENLLVK PRGIDSEYCP GYLFKAVGSV WDDALAKGEK DGFRNAQVSV IAPTGTIGLV
MDCDTTGIEP EFAIVKFKKL AGGGYFKIVN QSVHKALKRL GYSDTDIDEI EKYCKGYGTF
VGCPTISHQW LVSKGFTDDK IEAVEAQLSN VFDIRFAFNK WILGDEFCHS LGFSEEQLND
PHFNMLEALG ASSEDARAAN DYVCGTMTIE GAPHLRLEHL PVFDCAGTCG LKGVRYIKPM
AHVRMMSAVQ PFVSGAISKT VNMPPTATVE EISDVYLTAW QSMVKAITIY RDGSKLSQPL
SNSSYQDLDE VIMLGTEDDL DETLGPKEVQ ERIVEKVYHR SDRRLLPKRR KGYIREAYVG
GHKVFLRTGE YEDGSLGEVF IDMYKEGASF KGLLNCFAVL SSKALQYGMP LEELVDSFTF
TRFEPAGMVQ GHNVIKNATS ILDYVFRSIG YDYLGRKDFV HVKAVDEISH GEKAEKAENP
SANGHDPAGV NTVVETTKKA AAHAGHEHGG VADSQIMQAR VQGYSGEQCE NCGSVRVKQN
GTCKVCEDCG MTTGCS
|
|---|
| |