Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Paes_0552 |
Symbol | ispF |
ID | 6458656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prosthecochloris aestuarii DSM 271 |
Kingdom | Bacteria |
Replicon accession | NC_011059 |
Strand | - |
Start bp | 595866 |
End bp | 596339 |
Gene Length | 474 bp |
Protein Length | 157 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642724551 |
Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
Protein accession | YP_002015255 |
Protein GI | 194333395 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00461459 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.339091 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGTAG GTATAGGCAT TGACGTCCAT CAGTTTGTCG AAAACAGAAA ACTTATCATC GGCGGAATCG AAATCCCGCA CACGATGGGG CTGAAAGGCC ACAGCGATGC AGACGTGCTG CTGCACGCCA TCAGCGATGC CCTTCTGGGC GCAGCCGCGC TGGGCGACAT CGGCAAGCAT TTCCCCGATA CCAGCCCTGA TTTCAAAGAT ATCGACAGCA GAATACTCCT GCGTCATGTC GGCAAACTCA TCGCTGACGA AGGCTACACC ATCGTCAATA TCGACTCGAT GCTGCTCATG GAACGACCAA AAGTCGCGCC CTACATTGTG GCTATGAGAG AAAGTATCGC CGAATGCCTG GATATCGAGA CGAGCCGGGT ATCAGTCAAG GCAACCACAA ACGAAAAACT CGGCTACATC GGTCGCCAGG AAGGCGCCGC AGCTCACGCA GTCTGCCTGA TTGAAGAAAA ATAA
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Protein sequence | MRVGIGIDVH QFVENRKLII GGIEIPHTMG LKGHSDADVL LHAISDALLG AAALGDIGKH FPDTSPDFKD IDSRILLRHV GKLIADEGYT IVNIDSMLLM ERPKVAPYIV AMRESIAECL DIETSRVSVK ATTNEKLGYI GRQEGAAAHA VCLIEEK
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