Gene Paes_0552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPaes_0552 
SymbolispF 
ID6458656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProsthecochloris aestuarii DSM 271 
KingdomBacteria 
Replicon accessionNC_011059 
Strand
Start bp595866 
End bp596339 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content54% 
IMG OID642724551 
Product2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
Protein accessionYP_002015255 
Protein GI194333395 
COG category[I] Lipid transport and metabolism 
COG ID[COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 
TIGRFAM ID[TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00461459 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.339091 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGTAG GTATAGGCAT TGACGTCCAT CAGTTTGTCG AAAACAGAAA ACTTATCATC 
GGCGGAATCG AAATCCCGCA CACGATGGGG CTGAAAGGCC ACAGCGATGC AGACGTGCTG
CTGCACGCCA TCAGCGATGC CCTTCTGGGC GCAGCCGCGC TGGGCGACAT CGGCAAGCAT
TTCCCCGATA CCAGCCCTGA TTTCAAAGAT ATCGACAGCA GAATACTCCT GCGTCATGTC
GGCAAACTCA TCGCTGACGA AGGCTACACC ATCGTCAATA TCGACTCGAT GCTGCTCATG
GAACGACCAA AAGTCGCGCC CTACATTGTG GCTATGAGAG AAAGTATCGC CGAATGCCTG
GATATCGAGA CGAGCCGGGT ATCAGTCAAG GCAACCACAA ACGAAAAACT CGGCTACATC
GGTCGCCAGG AAGGCGCCGC AGCTCACGCA GTCTGCCTGA TTGAAGAAAA ATAA
 
Protein sequence
MRVGIGIDVH QFVENRKLII GGIEIPHTMG LKGHSDADVL LHAISDALLG AAALGDIGKH 
FPDTSPDFKD IDSRILLRHV GKLIADEGYT IVNIDSMLLM ERPKVAPYIV AMRESIAECL
DIETSRVSVK ATTNEKLGYI GRQEGAAAHA VCLIEEK