| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_0427 |
|---|
| Symbol | |
|---|
| ID | 6459248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011059 |
|---|
| Strand | + |
|---|
| Start bp | 460317 |
|---|
| End bp | 462344 |
|---|
| Gene Length | 2028 bp |
|---|
| Protein Length | 675 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642724427 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_002015131 |
|---|
| Protein GI | 194333271 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGCA AGGACGCTTT GAAAGAGATT GCTCGCCTGA GGGATGAGCT CAACCGGCAT
AACTACCGCT ATTATGTACT CGCTCAACCT GAGATATCGG ATTATGCGTT CGACCAGGAG
CTTGAAAGGC TTATAGCGCT TGAAAAAGCG TTTCCTGATC TGGTGACGCC CGACAGCCCC
AGCCAGCGGG TCGGGGGAGA GATTACAAAA GAGTTCCCGA CCGTTACGCA TCGCCAACCC
ATGAGGAGCC TTTCCAATAC TTACTCTCTC GAAGAGGTTG AGGAGTTTTA CGCTCGTGTG
CTGAAGCTGC TGCCTGAAGA GGCGGGGGAA AATCCCGAAT TTGTCGCAGA ACTCAAGTTT
GACGGTGTTG CCGTAAGCCT GCTCTATCGG GACGGTTTTC TTGTGCAGGG CGCGACCCGC
GGTAACGGGG TTGAGGGCGA CGATATTACG CCCAATATCA GAACGATCGG TTCGGTCCCG
CTGCAGTTGC GGGGAGGGGC CGCTATGGCT GCAGAGCAGT ATGGTGGAAG GGAGATTGAG
GTTCGAGGCG AAGTGTTTAT GCGGAAAGAT GATTTTGCCG CACTCAACGA GGGACGGCCG
GAGGAAGAGC AGTTTGCCAA TCCGCGCAAT GCTACGGCAG GGACGCTCAA ATTGCAGGAT
TCGGCTGAGG TCGCAAGGCG GAAAATGATG TTTGTCGCCT ACTATCTCAC TGATCCCCAA
TGCCGTTCGA TGCAGCATGT TCAGCGTCTG CAGCGCCTTG AAGAGATGGG CTTTTATACG
GGCGGGCACT ATAGCACGTG CCGTTCTTTT GATGAGATCC GTGATTTTAT CGGACGGTGG
GAGGTGGATC GCTTGACGCT TCAGTATGAT ATTGATGGTA TTGTTCTGAA ACTCAACAAC
CCCGCTTTCT GGGATGAGCT TGGCGCGACA TCGAAAAGTC CGCGCTGGGC TATTGCCTAC
AAGTATCCCG CCGAGCAGGC TGAAACGGTT CTCAATGACG TTGTTTTTCA GGTCGGCAGA
CTTGGTACCA TTACTCCTGT GGCAGAGCTT GAAGCGGTGA GGCTTGCAGG AACAACCGTG
AAACGCTCGA CGCTGCATAA TTTCGATGAG ATCCGTCGCC TCGATGTGCG CATCGGTGAC
AGGGTTGTTA TTGAAAAGTC AGGAGAGATC ATTCCAAAAG TCATCCGCGT TGTACCCGGA
ACACGGCGTG AAGACTCCAG TGAGATTGCC ATTCCCAGTC ATTGTCCGGT TTGCGGGACA
GCTCTGCTCC ATCCGGAAAA CGAGGTCAGC TGGTACTGCC CTAATAGTCA ATCCTGCCCT
GCGCAGGTTA AAGCGAGGAT TCTTCACTTC GCTTCGCGCA ATGCTATGGA TATAAAATCT
CTCGGCGAAT CCTTGGTTGA GCAGCTTGTC CATAACGGGC TGGTTGCAGA TTCTGGAGAC
CTGTATCGCC TTACGGCTGA TGAGGTTTCA CATCTCGATC GTATGGCCGA CAAGTCAGCC
ATGAATCTTC TCAAAGCGAT CGAGAAAAGC AGAACTCGCG AGTATGAGCG GGTGTTGTAT
GCATTGGGCA TTCGCCATGT CGGGCTTGCA ACAGCAAGAG AACTTGCAGC AGCGTACCAT
TCGATCGATC TTCTGGCTTC AGCAGCTCTT GAGGAACTCT CTTGCGTTGC CGATATAGGG
CCTGTTATTG CGCAGAGTGT GCATGATTTT TTCAGGAATC CCGACGCTCT CGCACTTGTC
GAAAAACTGA GGACTGCAGG TCTTCGGCTT GCAGCCAGCG CGCCAAAAGC CCTTGTGAAC
CGCAACTTCG AGGGGATGAA GGTCATTTTT ACCGGTACGC TCGAGCGCCA CAGCAGGGAT
GATGCCGCAG CTCTTGTTGC TCAACGGGGC GGCAAAGAGG TCAAGTCTCT TAGCAGGAAG
ACCGATCTTG TCGTTGCAGG AAAGGATCCG GGCAGCAAAC TTCAGAAAGC GCTGAAGCTC
GGTGTCAGGG TCATCGGTGA AGAGGAATTC GAAGCCATGC TTTTCTGA
|
|---|
| Protein sequence | MQRKDALKEI ARLRDELNRH NYRYYVLAQP EISDYAFDQE LERLIALEKA FPDLVTPDSP
SQRVGGEITK EFPTVTHRQP MRSLSNTYSL EEVEEFYARV LKLLPEEAGE NPEFVAELKF
DGVAVSLLYR DGFLVQGATR GNGVEGDDIT PNIRTIGSVP LQLRGGAAMA AEQYGGREIE
VRGEVFMRKD DFAALNEGRP EEEQFANPRN ATAGTLKLQD SAEVARRKMM FVAYYLTDPQ
CRSMQHVQRL QRLEEMGFYT GGHYSTCRSF DEIRDFIGRW EVDRLTLQYD IDGIVLKLNN
PAFWDELGAT SKSPRWAIAY KYPAEQAETV LNDVVFQVGR LGTITPVAEL EAVRLAGTTV
KRSTLHNFDE IRRLDVRIGD RVVIEKSGEI IPKVIRVVPG TRREDSSEIA IPSHCPVCGT
ALLHPENEVS WYCPNSQSCP AQVKARILHF ASRNAMDIKS LGESLVEQLV HNGLVADSGD
LYRLTADEVS HLDRMADKSA MNLLKAIEKS RTREYERVLY ALGIRHVGLA TARELAAAYH
SIDLLASAAL EELSCVADIG PVIAQSVHDF FRNPDALALV EKLRTAGLRL AASAPKALVN
RNFEGMKVIF TGTLERHSRD DAAALVAQRG GKEVKSLSRK TDLVVAGKDP GSKLQKALKL
GVRVIGEEEF EAMLF
|
|---|
| |